Expression of 1-1-1.4.9.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.107430.534
27DAP/17DAP0.799960.487
39DAP/27DAP0.73520.399
41DAP/39DAP0.913570.636
42DAP/41DAP0.873910.774
43DAP/42DAP1.085861
47DAP/43DAP0.781320.34
52DAP/47DAP1.055660.989
57DAP/52DAP0.765380.622

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.115540.126
17DAP/reference1.018220.717
27DAP/reference1.183460.165
39DAP/reference1.348920.04
41DAP/reference1.174410.187
42DAP/reference1.142060.01
43DAP/reference1.044640.758
47DAP/reference0.996820.602
52DAP/reference0.777550.062
57DAP/reference1.022290.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.152080.23
27DAP/17DAP0.869270.131
39DAP/27DAP0.760410.068
41DAP/39DAP1.239930.043
42DAP/41DAP0.846630.118
43DAP/42DAP0.734550.022
47DAP/43DAP0.95090.75
52DAP/47DAP0.993940.93
57DAP/52DAP0.900680.321
57DAP/7DAP0.85041

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.453730.028
17DAP/reference1.481140.007
27DAP/reference1.088090.301
39DAP/reference1.195130.05
41DAP/reference0.990730.619
42DAP/reference1.003650.828
43DAP/reference1.079570.457
47DAP/reference1.037620.915
52DAP/reference1.079730.563
57DAP/reference1.062630.746

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.019090.848
17DAP/reference1.219070.025
27DAP/reference1.108280.562
39DAP/reference1.164330.355
41DAP/reference1.108610.502
42DAP/reference0.958660.392
43DAP/reference0.970170.607
47DAP/reference1.002240.749
52DAP/reference0.922160.22
57DAP/reference0.94970.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.902550.015
17DAP/reference1.739510.082
27DAP/reference1.595380.02
39DAP/reference1.424540.014
41DAP/reference1.59710.009
42DAP/reference1.596160.012
43DAP/reference1.403690.012
47DAP/reference1.182220.063
52DAP/reference1.545010.233
57DAP/reference1.120350.717

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.928821
26DAP/20DAP0.653850.317
34DAP/26DAP1.082581
51DAP/34DAP0.754120.083
52DAP/51DAP1.034460.77
53DAP/52DAP0.981180.897
55DAP/53DAP1.105310.28
57DAP/55DAP1.153010.87
62DAP/57DAP1.053360.935
68DAP/62DAP0.934130.747
68DAP/14DAP0.783531

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.802140.034

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper5.264690.058
Mature Green Tomato/Ripe Tomato7.81770.015
Immature Eggplant/Mature Eggplant0.546530.223
Ripe Pepper/Ripe Tomato1.11464
Mature Eggplant/Ripe Tomato2.269461

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.03608
1-1-2/M820.946391
12-2/M820.73295
12-4/M820.96331
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M820.70193
2-6/M821.50855
3-2/M821.04357
4-1-1/M821.30976
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.73552
5-3/M821.254791
6-2/M82N/AN/A
6-3/M820.959631
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.59311

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.032150.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.040381
IL12-4/WTpooled0.971941
IL1-4/WTpooled0.84694
WT/WTpooled1.079911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.861030.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.976521
DC3000/delta hrp 6h1.115581
DC3000/delta hrp 12h1.176321
DC3000/delta hrp 24h0.614240.04

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.550240.031
DC3000 delta B/DC3000 delta AB0.5570.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.968251
Exp 36h0.711750.589
Exp 60h0.659410.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98031
Var 0h1.092790.936
Var 12h I row2-row10.74130.357
Var 12h NI row2-row10.89560.494
Var 36h I row2-row11.010631
Var 36h NI row2-row10.991830.852
Var 60h I row2-row11.461740.562
Var 60h NI row2-row11.018011
Time course 0hI-0hNI1.00091
Time course 12hI-12hNI0.931960.49
Time course 36hI-36hNI0.937470.274
Time course 60hI-60hNI0.182070.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.079930.221
transgenic ySAMdc/azygous control (breaker)1.148760.248
transgenic ySAMdc/azygous control (red)1.928360.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.929450.075

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.523540.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)6.03210.083
Manapal/WT (break)3.052530.126
Manapal/WT (red)4.592170.134