Expression of 1-1-1.4.9.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10743 | 0.534 |
27DAP/17DAP | 0.79996 | 0.487 |
39DAP/27DAP | 0.7352 | 0.399 |
41DAP/39DAP | 0.91357 | 0.636 |
42DAP/41DAP | 0.87391 | 0.774 |
43DAP/42DAP | 1.08586 | 1 |
47DAP/43DAP | 0.78132 | 0.34 |
52DAP/47DAP | 1.05566 | 0.989 |
57DAP/52DAP | 0.76538 | 0.622 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11554 | 0.126 |
17DAP/reference | 1.01822 | 0.717 |
27DAP/reference | 1.18346 | 0.165 |
39DAP/reference | 1.34892 | 0.04 |
41DAP/reference | 1.17441 | 0.187 |
42DAP/reference | 1.14206 | 0.01 |
43DAP/reference | 1.04464 | 0.758 |
47DAP/reference | 0.99682 | 0.602 |
52DAP/reference | 0.77755 | 0.062 |
57DAP/reference | 1.02229 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15208 | 0.23 |
27DAP/17DAP | 0.86927 | 0.131 |
39DAP/27DAP | 0.76041 | 0.068 |
41DAP/39DAP | 1.23993 | 0.043 |
42DAP/41DAP | 0.84663 | 0.118 |
43DAP/42DAP | 0.73455 | 0.022 |
47DAP/43DAP | 0.9509 | 0.75 |
52DAP/47DAP | 0.99394 | 0.93 |
57DAP/52DAP | 0.90068 | 0.321 |
57DAP/7DAP | 0.8504 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.45373 | 0.028 |
17DAP/reference | 1.48114 | 0.007 |
27DAP/reference | 1.08809 | 0.301 |
39DAP/reference | 1.19513 | 0.05 |
41DAP/reference | 0.99073 | 0.619 |
42DAP/reference | 1.00365 | 0.828 |
43DAP/reference | 1.07957 | 0.457 |
47DAP/reference | 1.03762 | 0.915 |
52DAP/reference | 1.07973 | 0.563 |
57DAP/reference | 1.06263 | 0.746 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01909 | 0.848 |
17DAP/reference | 1.21907 | 0.025 |
27DAP/reference | 1.10828 | 0.562 |
39DAP/reference | 1.16433 | 0.355 |
41DAP/reference | 1.10861 | 0.502 |
42DAP/reference | 0.95866 | 0.392 |
43DAP/reference | 0.97017 | 0.607 |
47DAP/reference | 1.00224 | 0.749 |
52DAP/reference | 0.92216 | 0.22 |
57DAP/reference | 0.9497 | 0.384 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.90255 | 0.015 |
17DAP/reference | 1.73951 | 0.082 |
27DAP/reference | 1.59538 | 0.02 |
39DAP/reference | 1.42454 | 0.014 |
41DAP/reference | 1.5971 | 0.009 |
42DAP/reference | 1.59616 | 0.012 |
43DAP/reference | 1.40369 | 0.012 |
47DAP/reference | 1.18222 | 0.063 |
52DAP/reference | 1.54501 | 0.233 |
57DAP/reference | 1.12035 | 0.717 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92882 | 1 |
26DAP/20DAP | 0.65385 | 0.317 |
34DAP/26DAP | 1.08258 | 1 |
51DAP/34DAP | 0.75412 | 0.083 |
52DAP/51DAP | 1.03446 | 0.77 |
53DAP/52DAP | 0.98118 | 0.897 |
55DAP/53DAP | 1.10531 | 0.28 |
57DAP/55DAP | 1.15301 | 0.87 |
62DAP/57DAP | 1.05336 | 0.935 |
68DAP/62DAP | 0.93413 | 0.747 |
68DAP/14DAP | 0.78353 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.80214 | 0.034 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 5.26469 | 0.058 |
Mature Green Tomato/Ripe Tomato | 7.8177 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.54653 | 0.223 |
Ripe Pepper/Ripe Tomato | 1.11464 | |
Mature Eggplant/Ripe Tomato | 2.26946 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03608 | |
1-1-2/M82 | 0.94639 | 1 |
12-2/M82 | 0.73295 | |
12-4/M82 | 0.96331 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 0.70193 | |
2-6/M82 | 1.50855 | |
3-2/M82 | 1.04357 | |
4-1-1/M82 | 1.30976 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.73552 | |
5-3/M82 | 1.25479 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.95963 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.5931 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.03215 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.04038 | 1 |
IL12-4/WTpooled | 0.97194 | 1 |
IL1-4/WTpooled | 0.84694 | |
WT/WTpooled | 1.07991 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.86103 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97652 | 1 |
DC3000/delta hrp 6h | 1.11558 | 1 |
DC3000/delta hrp 12h | 1.17632 | 1 |
DC3000/delta hrp 24h | 0.61424 | 0.04 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.55024 | 0.031 |
DC3000 delta B/DC3000 delta AB | 0.557 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96825 | 1 |
Exp 36h | 0.71175 | 0.589 |
Exp 60h | 0.65941 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9803 | 1 |
Var 0h | 1.09279 | 0.936 |
Var 12h I row2-row1 | 0.7413 | 0.357 |
Var 12h NI row2-row1 | 0.8956 | 0.494 |
Var 36h I row2-row1 | 1.01063 | 1 |
Var 36h NI row2-row1 | 0.99183 | 0.852 |
Var 60h I row2-row1 | 1.46174 | 0.562 |
Var 60h NI row2-row1 | 1.01801 | 1 |
Time course 0hI-0hNI | 1.0009 | 1 |
Time course 12hI-12hNI | 0.93196 | 0.49 |
Time course 36hI-36hNI | 0.93747 | 0.274 |
Time course 60hI-60hNI | 0.18207 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07993 | 0.221 |
transgenic ySAMdc/azygous control (breaker) | 1.14876 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.92836 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92945 | 0.075 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.52354 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 6.0321 | 0.083 |
Manapal/WT (break) | 3.05253 | 0.126 |
Manapal/WT (red) | 4.59217 | 0.134 |
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