Expression of 1-1-2.1.1.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00941 | 0.743 |
27DAP/17DAP | 1.02302 | 1 |
39DAP/27DAP | 1.15475 | 0.919 |
41DAP/39DAP | 1.05606 | 1 |
42DAP/41DAP | 1.21305 | 0.844 |
43DAP/42DAP | 1.17771 | 0.918 |
47DAP/43DAP | 0.54906 | 0.068 |
52DAP/47DAP | 1.28149 | 0.487 |
57DAP/52DAP | 1.22992 | 0.892 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05134 | 0.9 |
17DAP/reference | 1.09481 | 0.457 |
27DAP/reference | 0.9853 | 0.694 |
39DAP/reference | 1.02086 | 0.903 |
41DAP/reference | 0.99454 | 0.814 |
42DAP/reference | 0.94213 | 0.129 |
43DAP/reference | 1.06935 | 0.471 |
47DAP/reference | 1.37122 | 0.011 |
52DAP/reference | 1.1864 | 0.069 |
57DAP/reference | 1.2948 | 0.009 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1812 | 0.29 |
27DAP/17DAP | 0.7781 | 0.446 |
39DAP/27DAP | 1.42792 | 0.224 |
41DAP/39DAP | 0.73362 | 0.029 |
42DAP/41DAP | 1.1347 | 0.593 |
43DAP/42DAP | 1.16939 | 0.176 |
47DAP/43DAP | 0.89914 | 0.297 |
52DAP/47DAP | 1.23459 | 0.467 |
57DAP/52DAP | 0.86655 | 0.125 |
57DAP/7DAP | 3.57445 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07589 | 0.311 |
17DAP/reference | 1.12098 | 0.006 |
27DAP/reference | 1.09159 | 0.008 |
39DAP/reference | 1.10777 | 0.006 |
41DAP/reference | 1.0042 | 1 |
42DAP/reference | 1.0848 | 0.011 |
43DAP/reference | 1.10887 | 0.124 |
47DAP/reference | 1.10548 | 0.331 |
52DAP/reference | 1.12467 | 0.055 |
57DAP/reference | 1.0831 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01326 | 0.965 |
17DAP/reference | 0.96531 | 0.487 |
27DAP/reference | 1.06361 | 0.629 |
39DAP/reference | 1.18419 | 0.239 |
41DAP/reference | 1.19692 | 0.036 |
42DAP/reference | 1.09591 | 0.532 |
43DAP/reference | 1.06278 | 0.553 |
47DAP/reference | 1.13292 | 0.467 |
52DAP/reference | 1.04839 | 0.596 |
57DAP/reference | 0.96197 | 0.46 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03538 | 0.631 |
17DAP/reference | 0.98059 | 0.615 |
27DAP/reference | 1.02563 | 0.531 |
39DAP/reference | 1.06361 | 0.072 |
41DAP/reference | 1.05386 | 0.174 |
42DAP/reference | 1.20179 | 0.3 |
43DAP/reference | 1.44526 | 0.16 |
47DAP/reference | 1.11091 | 0.501 |
52DAP/reference | 1.07078 | 0.558 |
57DAP/reference | 2.34784 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04215 | 0.966 |
26DAP/20DAP | 1.04034 | 1 |
34DAP/26DAP | 0.75107 | |
51DAP/34DAP | 1.00577 | 0.98 |
52DAP/51DAP | 0.91921 | 1 |
53DAP/52DAP | 1.47057 | 0.033 |
55DAP/53DAP | 1.32501 | 0.361 |
57DAP/55DAP | 1.07622 | 0.745 |
62DAP/57DAP | 0.59359 | 0.002 |
68DAP/62DAP | 1.20569 | 0.573 |
68DAP/14DAP | 1.19571 | 0.279 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.48443 | 0.047 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.3366 | 0.073 |
Mature Green Tomato/Ripe Tomato | 1.90026 | 0.209 |
Immature Eggplant/Mature Eggplant | 0.5251 | 0.066 |
Ripe Pepper/Ripe Tomato | 7.76151 | 0.256 |
Mature Eggplant/Ripe Tomato | 4.86447 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.59372 | 0.492 |
1-1-2/M82 | 0.97485 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.95486 | 1 |
1-3/M82 | 1.02015 | |
2-1-1/M82 | 0.79711 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.29812 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.08336 | 0.241 |
4-3/M82 | 2.54089 | 0.268 |
5-3/M82 | 1.24946 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.58868 | 0.916 |
7-1/M82 | 1.23741 | 1 |
7-2/M82 | 0.80899 | 0.881 |
9-3-2/M82 | 0.81615 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93307 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.72584 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.75737 | 0.71 |
IL1-4/WTpooled | 0.95369 | 0.834 |
WT/WTpooled | 1.23566 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98588 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00214 | 1 |
DC3000/delta hrp 6h | 1.0328 | 1 |
DC3000/delta hrp 12h | 0.86034 | 1 |
DC3000/delta hrp 24h | 0.97095 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.3741 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08222 | 1 |
Exp 36h | 0.68653 | 0.456 |
Exp 60h | 0.88802 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0521 | 1 |
Var 0h | 0.62251 | 1 |
Var 12h I row2-row1 | 0.87673 | 0.338 |
Var 12h NI row2-row1 | 1.12633 | 0.649 |
Var 36h I row2-row1 | 0.98699 | 1 |
Var 36h NI row2-row1 | 0.84601 | 0.584 |
Var 60h I row2-row1 | 0.99623 | 0.952 |
Var 60h NI row2-row1 | 0.99569 | 1 |
Time course 0hI-0hNI | 0.75978 | 0.131 |
Time course 12hI-12hNI | 1.28078 | 0.58 |
Time course 36hI-36hNI | 0.97587 | 0.569 |
Time course 60hI-60hNI | 1.04038 | 0.495 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.29719 | 0.221 |
transgenic ySAMdc/azygous control (breaker) | 2.41538 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.02823 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0322 | 0.35 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.59465 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.77366 | 0.093 |
Manapal/WT (break) | 0.7954 | 1 |
Manapal/WT (red) | 0.68208 | 0.315 |
|
|