Expression of 1-1-2.1.1.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009410.743
27DAP/17DAP1.023021
39DAP/27DAP1.154750.919
41DAP/39DAP1.056061
42DAP/41DAP1.213050.844
43DAP/42DAP1.177710.918
47DAP/43DAP0.549060.068
52DAP/47DAP1.281490.487
57DAP/52DAP1.229920.892

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.051340.9
17DAP/reference1.094810.457
27DAP/reference0.98530.694
39DAP/reference1.020860.903
41DAP/reference0.994540.814
42DAP/reference0.942130.129
43DAP/reference1.069350.471
47DAP/reference1.371220.011
52DAP/reference1.18640.069
57DAP/reference1.29480.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.18120.29
27DAP/17DAP0.77810.446
39DAP/27DAP1.427920.224
41DAP/39DAP0.733620.029
42DAP/41DAP1.13470.593
43DAP/42DAP1.169390.176
47DAP/43DAP0.899140.297
52DAP/47DAP1.234590.467
57DAP/52DAP0.866550.125
57DAP/7DAP3.574451

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.075890.311
17DAP/reference1.120980.006
27DAP/reference1.091590.008
39DAP/reference1.107770.006
41DAP/reference1.00421
42DAP/reference1.08480.011
43DAP/reference1.108870.124
47DAP/reference1.105480.331
52DAP/reference1.124670.055
57DAP/reference1.08310.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.013260.965
17DAP/reference0.965310.487
27DAP/reference1.063610.629
39DAP/reference1.184190.239
41DAP/reference1.196920.036
42DAP/reference1.095910.532
43DAP/reference1.062780.553
47DAP/reference1.132920.467
52DAP/reference1.048390.596
57DAP/reference0.961970.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.035380.631
17DAP/reference0.980590.615
27DAP/reference1.025630.531
39DAP/reference1.063610.072
41DAP/reference1.053860.174
42DAP/reference1.201790.3
43DAP/reference1.445260.16
47DAP/reference1.110910.501
52DAP/reference1.070780.558
57DAP/reference2.347840.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.042150.966
26DAP/20DAP1.040341
34DAP/26DAP0.75107
51DAP/34DAP1.005770.98
52DAP/51DAP0.919211
53DAP/52DAP1.470570.033
55DAP/53DAP1.325010.361
57DAP/55DAP1.076220.745
62DAP/57DAP0.593590.002
68DAP/62DAP1.205690.573
68DAP/14DAP1.195710.279

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.484430.047

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.33660.073
Mature Green Tomato/Ripe Tomato1.900260.209
Immature Eggplant/Mature Eggplant0.52510.066
Ripe Pepper/Ripe Tomato7.761510.256
Mature Eggplant/Ripe Tomato4.864470.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.593720.492
1-1-2/M820.974851
12-2/M82N/AN/A
12-4/M820.954861
1-3/M821.02015
2-1-1/M820.79711
2-1/M82N/AN/A
2-6/M820.29812
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.083360.241
4-3/M822.540890.268
5-3/M821.249460.572
6-2/M82N/AN/A
6-3/M820.588680.916
7-1/M821.237411
7-2/M820.808990.881
9-3-2/M820.81615

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.933071
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.72584
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.757370.71
IL1-4/WTpooled0.953690.834
WT/WTpooled1.235661

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.985881

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.002141
DC3000/delta hrp 6h1.03281
DC3000/delta hrp 12h0.860341
DC3000/delta hrp 24h0.970950.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.3741
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.082221
Exp 36h0.686530.456
Exp 60h0.888020.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.05211
Var 0h0.622511
Var 12h I row2-row10.876730.338
Var 12h NI row2-row11.126330.649
Var 36h I row2-row10.986991
Var 36h NI row2-row10.846010.584
Var 60h I row2-row10.996230.952
Var 60h NI row2-row10.995691
Time course 0hI-0hNI0.759780.131
Time course 12hI-12hNI1.280780.58
Time course 36hI-36hNI0.975870.569
Time course 60hI-60hNI1.040380.495

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.297190.221
transgenic ySAMdc/azygous control (breaker)2.415380.178
transgenic ySAMdc/azygous control (red)1.028231

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.03220.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.594650.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.773660.093
Manapal/WT (break)0.79541
Manapal/WT (red)0.682080.315