Expression of 1-1-2.1.1.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.918080.503
27DAP/17DAP1.043830.881
39DAP/27DAP1.849470.105
41DAP/39DAP1.000720.958
42DAP/41DAP1.135940.882
43DAP/42DAP0.857010.483
47DAP/43DAP0.870440.584
52DAP/47DAP1.393730.665
57DAP/52DAP1.328120.907

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.271780.015
17DAP/reference1.070220.399
27DAP/reference1.258850.258
39DAP/reference1.107910.318
41DAP/reference1.531750.036
42DAP/reference1.230350.013
43DAP/reference0.91150.576
47DAP/reference1.222230.044
52DAP/reference1.224330.088
57DAP/reference1.258620.27

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.160360.161
27DAP/17DAP0.908250.648
39DAP/27DAP0.955290.754
41DAP/39DAP0.920050.713
42DAP/41DAP1.121210.46
43DAP/42DAP0.911290.351
47DAP/43DAP0.895810.332
52DAP/47DAP1.990990.049
57DAP/52DAP1.977250.037
57DAP/7DAP1.158181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.722170.063
17DAP/reference0.764680.018
27DAP/reference0.859470.055
39DAP/reference0.671730.021
41DAP/reference0.649030.018
42DAP/reference0.735540.012
43DAP/reference0.928250.21
47DAP/reference1.103310.413
52DAP/reference0.658540.012
57DAP/reference0.747690.013

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.142370.206
17DAP/reference1.134290.484
27DAP/reference0.990060.619
39DAP/reference1.236470.073
41DAP/reference1.076990.846
42DAP/reference1.112380.294
43DAP/reference1.088240.617
47DAP/reference1.141480.164
52DAP/reference1.312740.065
57DAP/reference1.171220.2

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.000510.75
17DAP/reference0.951280.55
27DAP/reference0.819350.147
39DAP/reference0.918760.328
41DAP/reference0.827770.086
42DAP/reference1.031860.816
43DAP/reference0.888480.171
47DAP/reference0.978110.525
52DAP/reference0.918380.505
57DAP/reference1.084890.648

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.648460.047
26DAP/20DAP1.334211
34DAP/26DAP2.532130.819
51DAP/34DAP1.385780.719
52DAP/51DAP2.54850.035
53DAP/52DAP0.708350.049
55DAP/53DAP1.333370.042
57DAP/55DAP0.603030.084
62DAP/57DAP0.682630.088
68DAP/62DAP0.835490.7
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.426370.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.847670.309
Mature Green Tomato/Ripe Tomato1.36770.437
Immature Eggplant/Mature Eggplant1.936830.05
Ripe Pepper/Ripe Tomato3.020190.258
Mature Eggplant/Ripe Tomato1.402830.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.384910.591
1-1-2/M821.03176
12-2/M821.25047
12-4/M820.863920.319
1-3/M821.09044
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.961251
3-2/M821.246550.463
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.94393
4-3/M820.761110.611
5-3/M821.415110.496
6-2/M821.04924
6-3/M821.031611
7-1/M820.943191
7-2/M820.959820.553
9-3-2/M820.8516

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.011391
IL2-6/WTpooled1.037151
IL7-5/WTpooled1.075920.792
IL7-3/WTpooled1.119461
IL12-4/WTpooled0.96321
IL1-4/WTpooled0.971730.834
WT/WTpooled0.988721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.166730.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.012231
DC3000/delta hrp 6h1.05870.95
DC3000/delta hrp 12h1.311871
DC3000/delta hrp 24h2.228170.027

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.217380.06
DC3000 delta B/DC3000 delta AB1.428620.113

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.820291
Exp 36h1.184131
Exp 60h1.550020.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.007291
Var 0h0.909410.933
Var 12h I row2-row10.803680.418
Var 12h NI row2-row11.058711
Var 36h I row2-row11.019121
Var 36h NI row2-row11.265670.482
Var 60h I row2-row10.769170.374
Var 60h NI row2-row10.908381
Time course 0hI-0hNI0.935350.59
Time course 12hI-12hNI0.9660.814
Time course 36hI-36hNI1.01521
Time course 60hI-60hNI1.200360.069

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.916790.348
transgenic ySAMdc/azygous control (breaker)1.013671
transgenic ySAMdc/azygous control (red)0.949371

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.404140.045

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.638210.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.151881
Manapal/WT (break)1.360680.14
Manapal/WT (red)1.818670.413