Expression of 1-1-2.1.1.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91808 | 0.503 |
27DAP/17DAP | 1.04383 | 0.881 |
39DAP/27DAP | 1.84947 | 0.105 |
41DAP/39DAP | 1.00072 | 0.958 |
42DAP/41DAP | 1.13594 | 0.882 |
43DAP/42DAP | 0.85701 | 0.483 |
47DAP/43DAP | 0.87044 | 0.584 |
52DAP/47DAP | 1.39373 | 0.665 |
57DAP/52DAP | 1.32812 | 0.907 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27178 | 0.015 |
17DAP/reference | 1.07022 | 0.399 |
27DAP/reference | 1.25885 | 0.258 |
39DAP/reference | 1.10791 | 0.318 |
41DAP/reference | 1.53175 | 0.036 |
42DAP/reference | 1.23035 | 0.013 |
43DAP/reference | 0.9115 | 0.576 |
47DAP/reference | 1.22223 | 0.044 |
52DAP/reference | 1.22433 | 0.088 |
57DAP/reference | 1.25862 | 0.27 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16036 | 0.161 |
27DAP/17DAP | 0.90825 | 0.648 |
39DAP/27DAP | 0.95529 | 0.754 |
41DAP/39DAP | 0.92005 | 0.713 |
42DAP/41DAP | 1.12121 | 0.46 |
43DAP/42DAP | 0.91129 | 0.351 |
47DAP/43DAP | 0.89581 | 0.332 |
52DAP/47DAP | 1.99099 | 0.049 |
57DAP/52DAP | 1.97725 | 0.037 |
57DAP/7DAP | 1.15818 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.72217 | 0.063 |
17DAP/reference | 0.76468 | 0.018 |
27DAP/reference | 0.85947 | 0.055 |
39DAP/reference | 0.67173 | 0.021 |
41DAP/reference | 0.64903 | 0.018 |
42DAP/reference | 0.73554 | 0.012 |
43DAP/reference | 0.92825 | 0.21 |
47DAP/reference | 1.10331 | 0.413 |
52DAP/reference | 0.65854 | 0.012 |
57DAP/reference | 0.74769 | 0.013 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14237 | 0.206 |
17DAP/reference | 1.13429 | 0.484 |
27DAP/reference | 0.99006 | 0.619 |
39DAP/reference | 1.23647 | 0.073 |
41DAP/reference | 1.07699 | 0.846 |
42DAP/reference | 1.11238 | 0.294 |
43DAP/reference | 1.08824 | 0.617 |
47DAP/reference | 1.14148 | 0.164 |
52DAP/reference | 1.31274 | 0.065 |
57DAP/reference | 1.17122 | 0.2 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00051 | 0.75 |
17DAP/reference | 0.95128 | 0.55 |
27DAP/reference | 0.81935 | 0.147 |
39DAP/reference | 0.91876 | 0.328 |
41DAP/reference | 0.82777 | 0.086 |
42DAP/reference | 1.03186 | 0.816 |
43DAP/reference | 0.88848 | 0.171 |
47DAP/reference | 0.97811 | 0.525 |
52DAP/reference | 0.91838 | 0.505 |
57DAP/reference | 1.08489 | 0.648 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.64846 | 0.047 |
26DAP/20DAP | 1.33421 | 1 |
34DAP/26DAP | 2.53213 | 0.819 |
51DAP/34DAP | 1.38578 | 0.719 |
52DAP/51DAP | 2.5485 | 0.035 |
53DAP/52DAP | 0.70835 | 0.049 |
55DAP/53DAP | 1.33337 | 0.042 |
57DAP/55DAP | 0.60303 | 0.084 |
62DAP/57DAP | 0.68263 | 0.088 |
68DAP/62DAP | 0.83549 | 0.7 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.42637 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.84767 | 0.309 |
Mature Green Tomato/Ripe Tomato | 1.3677 | 0.437 |
Immature Eggplant/Mature Eggplant | 1.93683 | 0.05 |
Ripe Pepper/Ripe Tomato | 3.02019 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.40283 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.38491 | 0.591 |
1-1-2/M82 | 1.03176 | |
12-2/M82 | 1.25047 | |
12-4/M82 | 0.86392 | 0.319 |
1-3/M82 | 1.09044 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96125 | 1 |
3-2/M82 | 1.24655 | 0.463 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.94393 | |
4-3/M82 | 0.76111 | 0.611 |
5-3/M82 | 1.41511 | 0.496 |
6-2/M82 | 1.04924 | |
6-3/M82 | 1.03161 | 1 |
7-1/M82 | 0.94319 | 1 |
7-2/M82 | 0.95982 | 0.553 |
9-3-2/M82 | 0.8516 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01139 | 1 |
IL2-6/WTpooled | 1.03715 | 1 |
IL7-5/WTpooled | 1.07592 | 0.792 |
IL7-3/WTpooled | 1.11946 | 1 |
IL12-4/WTpooled | 0.9632 | 1 |
IL1-4/WTpooled | 0.97173 | 0.834 |
WT/WTpooled | 0.98872 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16673 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01223 | 1 |
DC3000/delta hrp 6h | 1.0587 | 0.95 |
DC3000/delta hrp 12h | 1.31187 | 1 |
DC3000/delta hrp 24h | 2.22817 | 0.027 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21738 | 0.06 |
DC3000 delta B/DC3000 delta AB | 1.42862 | 0.113 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.82029 | 1 |
Exp 36h | 1.18413 | 1 |
Exp 60h | 1.55002 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00729 | 1 |
Var 0h | 0.90941 | 0.933 |
Var 12h I row2-row1 | 0.80368 | 0.418 |
Var 12h NI row2-row1 | 1.05871 | 1 |
Var 36h I row2-row1 | 1.01912 | 1 |
Var 36h NI row2-row1 | 1.26567 | 0.482 |
Var 60h I row2-row1 | 0.76917 | 0.374 |
Var 60h NI row2-row1 | 0.90838 | 1 |
Time course 0hI-0hNI | 0.93535 | 0.59 |
Time course 12hI-12hNI | 0.966 | 0.814 |
Time course 36hI-36hNI | 1.0152 | 1 |
Time course 60hI-60hNI | 1.20036 | 0.069 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91679 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 1.01367 | 1 |
transgenic ySAMdc/azygous control (red) | 0.94937 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.40414 | 0.045 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.63821 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.15188 | 1 |
Manapal/WT (break) | 1.36068 | 0.14 |
Manapal/WT (red) | 1.81867 | 0.413 |
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