Expression of 1-1-2.1.1.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.846680.324
27DAP/17DAP0.990321
39DAP/27DAP0.896850.421
41DAP/39DAP1.147440.386
42DAP/41DAP0.999461
43DAP/42DAP0.923480.801
47DAP/43DAP0.820410.416
52DAP/47DAP1.36620.418
57DAP/52DAP1.007160.988

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.123430.29
17DAP/reference1.082090.193
27DAP/reference1.042110.539
39DAP/reference0.983640.762
41DAP/reference1.108760.587
42DAP/reference1.206390.006
43DAP/reference1.004040.904
47DAP/reference1.297450.001
52DAP/reference1.331410.01
57DAP/reference1.122740.952

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.991010.826
27DAP/17DAP1.089130.73
39DAP/27DAP1.063270.519
41DAP/39DAP0.991261
42DAP/41DAP1.012651
43DAP/42DAP1.01960.554
47DAP/43DAP0.986940.928
52DAP/47DAP0.978690.857
57DAP/52DAP1.001961
57DAP/7DAP1.176280.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.983950.032
17DAP/reference1.847940.019
27DAP/reference1.92460.006
39DAP/reference1.571240.008
41DAP/reference1.480380.013
42DAP/reference1.526620.009
43DAP/reference1.733850.006
47DAP/reference1.822110.121
52DAP/reference8.301410.007
57DAP/reference4.444010.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.322240.261
17DAP/reference1.255170.03
27DAP/reference1.170580.08
39DAP/reference1.315710.071
41DAP/reference1.307280.036
42DAP/reference1.176870.115
43DAP/reference1.021810.787
47DAP/reference1.225090.008
52DAP/reference1.275740.01
57DAP/reference1.325750.025

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.27040.019
17DAP/reference1.060590.665
27DAP/reference1.443680.036
39DAP/reference2.724280.016
41DAP/reference2.986960.01
42DAP/reference1.911910.009
43DAP/reference1.666930.012
47DAP/reference1.071630.63
52DAP/reference2.220240.067
57DAP/reference1.305320.083

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.031971
26DAP/20DAP0.966511
34DAP/26DAP1.024441
51DAP/34DAP0.948830.472
52DAP/51DAP0.953380.151
53DAP/52DAP0.879060.498
55DAP/53DAP0.993420.917
57DAP/55DAP1.066530.915
62DAP/57DAP1.068150.069
68DAP/62DAP0.848850.579
68DAP/14DAP0.971321

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.941170.269

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.248660.113
Mature Green Tomato/Ripe Tomato1.296430.185
Immature Eggplant/Mature Eggplant1.182540.222
Ripe Pepper/Ripe Tomato0.865870.293
Mature Eggplant/Ripe Tomato0.771961

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.945261
12-2/M82N/AN/A
12-4/M821.088541
1-3/M820.70321
2-1-1/M822.7791
2-1/M82N/AN/A
2-6/M821.112120.695
3-2/M820.957181
4-1-1/M82N/AN/A
4-1/M820.876771
4-3-2/M820.79670.487
4-3/M820.65533
5-3/M821.014921
6-2/M82N/AN/A
6-3/M821.108431
7-1/M820.94907
7-2/M820.913370.881
9-3-2/M820.871490.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.183310.493
IL2-6/WTpooled1.332220.427
IL7-5/WTpooled0.783981
IL7-3/WTpooled0.9949
IL12-4/WTpooled1.09887
IL1-4/WTpooled1.154631
WT/WTpooled1.16107

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.902270.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.914411
DC3000/delta hrp 6h1.049881
DC3000/delta hrp 12h1.183551
DC3000/delta hrp 24h0.837890.079

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.214980.145
DC3000 delta B/DC3000 delta AB1.018160.748

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.085911
Exp 36h1.160821
Exp 60h1.324790.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.985091
Var 0h0.531040.936
Var 12h I row2-row11.090630.324
Var 12h NI row2-row11.026031
Var 36h I row2-row10.939351
Var 36h NI row2-row10.878150.522
Var 60h I row2-row11.150310.562
Var 60h NI row2-row11.25390.904
Time course 0hI-0hNI1.046490.852
Time course 12hI-12hNI1.018990.85
Time course 36hI-36hNI0.960870.468
Time course 60hI-60hNI1.304110.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.062070.408
transgenic ySAMdc/azygous control (breaker)1.311950.178
transgenic ySAMdc/azygous control (red)0.960031

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.991990.609

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.075930.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.628450.093
Manapal/WT (break)1.602940.183
Manapal/WT (red)N/AN/A