Expression of 1-1-2.1.10.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.977770.752
27DAP/17DAP0.865140.717
39DAP/27DAP0.942010.682
41DAP/39DAP1.298930.657
42DAP/41DAP0.888131
43DAP/42DAP1.154920.985
47DAP/43DAP1.043750.95
52DAP/47DAP0.967830.854
57DAP/52DAP0.870250.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.971770.578
17DAP/reference0.822690.079
27DAP/reference0.911860.395
39DAP/reference0.764190.028
41DAP/reference0.667020.016
42DAP/reference0.80810.005
43DAP/reference0.997320.805
47DAP/reference0.890380.046
52DAP/reference0.855040.215
57DAP/reference1.153710.114

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.993470.782
27DAP/17DAP0.932030.821
39DAP/27DAP0.953540.692
41DAP/39DAP1.31740.157
42DAP/41DAP1.101781
43DAP/42DAP1.029530.83
47DAP/43DAP0.957740.833
52DAP/47DAP0.807330.217
57DAP/52DAP1.009740.892
57DAP/7DAP1.198081

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.898860.361
17DAP/reference1.189630.361
27DAP/reference1.23310.16
39DAP/reference1.114240.237
41DAP/reference1.155040.43
42DAP/reference0.852550.151
43DAP/reference0.981020.502
47DAP/reference0.959260.504
52DAP/reference0.959340.398
57DAP/reference0.782790.144

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.970860.688
17DAP/reference0.796040.17
27DAP/reference0.900380.155
39DAP/reference0.837770.221
41DAP/reference0.86570.156
42DAP/reference0.833820.15
43DAP/reference0.878730.229
47DAP/reference0.825220.071
52DAP/reference0.882940.187
57DAP/reference0.883510.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.954550.455
17DAP/reference0.797260.132
27DAP/reference0.988130.727
39DAP/reference0.903140.328
41DAP/reference0.982040.618
42DAP/reference0.753340.025
43DAP/reference0.907410.449
47DAP/reference0.773120.097
52DAP/reference0.703580.18
57DAP/reference1.115720.204

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.81491
26DAP/20DAP0.716280.317
34DAP/26DAP0.985810.988
51DAP/34DAP1.347710.416
52DAP/51DAP0.886081
53DAP/52DAP1.074970.868
55DAP/53DAP1.087620.982
57DAP/55DAP1.298730.407
62DAP/57DAP0.855990.162
68DAP/62DAP1.579640.866
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.144880.527

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant3.334110.05
Ripe Pepper/Ripe Tomato10.3108
Mature Eggplant/Ripe Tomato4.52203

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.86654
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.041040.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.919871
IL12-4/WTpooled0.788430.581
IL1-4/WTpooled1.093611
WT/WTpooled0.964721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.972611

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.249080.75
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h2.447940.031

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.68233
DC3000 delta B/DC3000 delta AB0.587510.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h6.492761
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004321
Var 0h1.131930.936
Var 12h I row2-row10.993351
Var 12h NI row2-row10.944290.82
Var 36h I row2-row11.101481
Var 36h NI row2-row10.877050.61
Var 60h I row2-row11.111820.562
Var 60h NI row2-row10.942051
Time course 0hI-0hNI1.015371
Time course 12hI-12hNI0.993491
Time course 36hI-36hNI1.21320.012
Time course 60hI-60hNI1.263250.187

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.713951
transgenic ySAMdc/azygous control (red)1.091031

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.855250.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.401160.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.232371