Expression of 1-1-2.1.10.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97777 | 0.752 |
27DAP/17DAP | 0.86514 | 0.717 |
39DAP/27DAP | 0.94201 | 0.682 |
41DAP/39DAP | 1.29893 | 0.657 |
42DAP/41DAP | 0.88813 | 1 |
43DAP/42DAP | 1.15492 | 0.985 |
47DAP/43DAP | 1.04375 | 0.95 |
52DAP/47DAP | 0.96783 | 0.854 |
57DAP/52DAP | 0.87025 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97177 | 0.578 |
17DAP/reference | 0.82269 | 0.079 |
27DAP/reference | 0.91186 | 0.395 |
39DAP/reference | 0.76419 | 0.028 |
41DAP/reference | 0.66702 | 0.016 |
42DAP/reference | 0.8081 | 0.005 |
43DAP/reference | 0.99732 | 0.805 |
47DAP/reference | 0.89038 | 0.046 |
52DAP/reference | 0.85504 | 0.215 |
57DAP/reference | 1.15371 | 0.114 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99347 | 0.782 |
27DAP/17DAP | 0.93203 | 0.821 |
39DAP/27DAP | 0.95354 | 0.692 |
41DAP/39DAP | 1.3174 | 0.157 |
42DAP/41DAP | 1.10178 | 1 |
43DAP/42DAP | 1.02953 | 0.83 |
47DAP/43DAP | 0.95774 | 0.833 |
52DAP/47DAP | 0.80733 | 0.217 |
57DAP/52DAP | 1.00974 | 0.892 |
57DAP/7DAP | 1.19808 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89886 | 0.361 |
17DAP/reference | 1.18963 | 0.361 |
27DAP/reference | 1.2331 | 0.16 |
39DAP/reference | 1.11424 | 0.237 |
41DAP/reference | 1.15504 | 0.43 |
42DAP/reference | 0.85255 | 0.151 |
43DAP/reference | 0.98102 | 0.502 |
47DAP/reference | 0.95926 | 0.504 |
52DAP/reference | 0.95934 | 0.398 |
57DAP/reference | 0.78279 | 0.144 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97086 | 0.688 |
17DAP/reference | 0.79604 | 0.17 |
27DAP/reference | 0.90038 | 0.155 |
39DAP/reference | 0.83777 | 0.221 |
41DAP/reference | 0.8657 | 0.156 |
42DAP/reference | 0.83382 | 0.15 |
43DAP/reference | 0.87873 | 0.229 |
47DAP/reference | 0.82522 | 0.071 |
52DAP/reference | 0.88294 | 0.187 |
57DAP/reference | 0.88351 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95455 | 0.455 |
17DAP/reference | 0.79726 | 0.132 |
27DAP/reference | 0.98813 | 0.727 |
39DAP/reference | 0.90314 | 0.328 |
41DAP/reference | 0.98204 | 0.618 |
42DAP/reference | 0.75334 | 0.025 |
43DAP/reference | 0.90741 | 0.449 |
47DAP/reference | 0.77312 | 0.097 |
52DAP/reference | 0.70358 | 0.18 |
57DAP/reference | 1.11572 | 0.204 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.8149 | 1 |
26DAP/20DAP | 0.71628 | 0.317 |
34DAP/26DAP | 0.98581 | 0.988 |
51DAP/34DAP | 1.34771 | 0.416 |
52DAP/51DAP | 0.88608 | 1 |
53DAP/52DAP | 1.07497 | 0.868 |
55DAP/53DAP | 1.08762 | 0.982 |
57DAP/55DAP | 1.29873 | 0.407 |
62DAP/57DAP | 0.85599 | 0.162 |
68DAP/62DAP | 1.57964 | 0.866 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.14488 | 0.527 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 3.33411 | 0.05 |
Ripe Pepper/Ripe Tomato | 10.3108 | |
Mature Eggplant/Ripe Tomato | 4.52203 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.86654 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.04104 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.91987 | 1 |
IL12-4/WTpooled | 0.78843 | 0.581 |
IL1-4/WTpooled | 1.09361 | 1 |
WT/WTpooled | 0.96472 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97261 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.24908 | 0.75 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 2.44794 | 0.031 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.68233 | |
DC3000 delta B/DC3000 delta AB | 0.58751 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 6.49276 | 1 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00432 | 1 |
Var 0h | 1.13193 | 0.936 |
Var 12h I row2-row1 | 0.99335 | 1 |
Var 12h NI row2-row1 | 0.94429 | 0.82 |
Var 36h I row2-row1 | 1.10148 | 1 |
Var 36h NI row2-row1 | 0.87705 | 0.61 |
Var 60h I row2-row1 | 1.11182 | 0.562 |
Var 60h NI row2-row1 | 0.94205 | 1 |
Time course 0hI-0hNI | 1.01537 | 1 |
Time course 12hI-12hNI | 0.99349 | 1 |
Time course 36hI-36hNI | 1.2132 | 0.012 |
Time course 60hI-60hNI | 1.26325 | 0.187 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.71395 | 1 |
transgenic ySAMdc/azygous control (red) | 1.09103 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.85525 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.40116 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.23237 | 1 |
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