Expression of 1-1-2.1.10.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.13950.485
27DAP/17DAP1.0440.926
39DAP/27DAP0.899320.458
41DAP/39DAP0.974210.893
42DAP/41DAP0.843060.774
43DAP/42DAP1.056911
47DAP/43DAP1.292020.513
52DAP/47DAP0.931250.724
57DAP/52DAP0.928630.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.068330.587
17DAP/reference1.125410.248
27DAP/reference1.091150.339
39DAP/reference1.256580.079
41DAP/reference1.193960.085
42DAP/reference0.962890.287
43DAP/reference1.064780.495
47DAP/reference1.102820.391
52DAP/reference1.157790.186
57DAP/reference1.156620.239

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.947370.542
27DAP/17DAP1.013140.98
39DAP/27DAP1.055790.646
41DAP/39DAP0.948090.885
42DAP/41DAP1.056530.947
43DAP/42DAP1.069030.478
47DAP/43DAP0.998670.989
52DAP/47DAP1.192780.458
57DAP/52DAP1.083930.529
57DAP/7DAP1.052131

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.786560.08
17DAP/reference0.951780.338
27DAP/reference1.10850.035
39DAP/reference1.002330.745
41DAP/reference1.121050.767
42DAP/reference1.06880.405
43DAP/reference0.984750.555
47DAP/reference0.989750.671
52DAP/reference0.944840.332
57DAP/reference0.85310.077

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.150130.308
17DAP/reference1.040851
27DAP/reference1.277160.072
39DAP/reference1.041481
41DAP/reference0.956550.432
42DAP/reference1.477740.009
43DAP/reference1.973290.027
47DAP/reference1.411780.017
52DAP/reference1.341620.017
57DAP/reference0.97860.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960220.422
17DAP/reference0.982010.681
27DAP/reference1.141930.621
39DAP/reference1.061790.67
41DAP/reference1.220580.343
42DAP/reference1.03580.566
43DAP/reference0.882830.267
47DAP/reference1.175850.11
52DAP/reference0.842550.232
57DAP/reference1.024411

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.123460.945
26DAP/20DAP0.895030.512
34DAP/26DAP1.047540.819
51DAP/34DAP1.143050.55
52DAP/51DAP1.151170.722
53DAP/52DAP1.036341
55DAP/53DAP1.22950.28
57DAP/55DAP1.13340.854
62DAP/57DAP0.865390.681
68DAP/62DAP0.94170.769
68DAP/14DAP2.70413

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.022921

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.313310.03
Immature Eggplant/Mature Eggplant1.32620.072
Ripe Pepper/Ripe Tomato1.418920.256
Mature Eggplant/Ripe Tomato0.749960.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.021651
1-1-2/M821.01354
12-2/M821.077640.61
12-4/M820.99781
1-3/M821.03276
2-1-1/M821.49107
2-1/M82N/AN/A
2-6/M821.049091
3-2/M821.19717
4-1-1/M820.936431
4-1/M821.187890.283
4-3-2/M820.903950.698
4-3/M821.19888
5-3/M820.948281
6-2/M820.95368
6-3/M821.121360.971
7-1/M821.10487
7-2/M821.015831
9-3-2/M820.926770.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.237131
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.994681
IL12-4/WTpooled0.859241
IL1-4/WTpooled0.801470.444
WT/WTpooled0.926441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.000381

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.009461
DC3000/delta hrp 6h0.768120.915
DC3000/delta hrp 12h0.999121
DC3000/delta hrp 24h1.146520.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.42743
DC3000 delta B/DC3000 delta AB0.999810.805

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.079491
Exp 36h0.92610.749
Exp 60h1.107670.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.8862
Var 12h I row2-row11.104590.125
Var 12h NI row2-row10.95681
Var 36h I row2-row10.99659
Var 36h NI row2-row10.860680.706
Var 60h I row2-row10.97676
Var 60h NI row2-row10.929431
Time course 0hI-0hNI1.019611
Time course 12hI-12hNI0.968210.836
Time course 36hI-36hNI0.989060.718
Time course 60hI-60hNI0.84010.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.037550.331
transgenic ySAMdc/azygous control (breaker)1.180650.178
transgenic ySAMdc/azygous control (red)0.889071

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.002111

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.914720.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.996061
Manapal/WT (break)1.180890.183
Manapal/WT (red)0.975760.863