Expression of 1-1-2.1.10.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1395 | 0.485 |
27DAP/17DAP | 1.044 | 0.926 |
39DAP/27DAP | 0.89932 | 0.458 |
41DAP/39DAP | 0.97421 | 0.893 |
42DAP/41DAP | 0.84306 | 0.774 |
43DAP/42DAP | 1.05691 | 1 |
47DAP/43DAP | 1.29202 | 0.513 |
52DAP/47DAP | 0.93125 | 0.724 |
57DAP/52DAP | 0.92863 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06833 | 0.587 |
17DAP/reference | 1.12541 | 0.248 |
27DAP/reference | 1.09115 | 0.339 |
39DAP/reference | 1.25658 | 0.079 |
41DAP/reference | 1.19396 | 0.085 |
42DAP/reference | 0.96289 | 0.287 |
43DAP/reference | 1.06478 | 0.495 |
47DAP/reference | 1.10282 | 0.391 |
52DAP/reference | 1.15779 | 0.186 |
57DAP/reference | 1.15662 | 0.239 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94737 | 0.542 |
27DAP/17DAP | 1.01314 | 0.98 |
39DAP/27DAP | 1.05579 | 0.646 |
41DAP/39DAP | 0.94809 | 0.885 |
42DAP/41DAP | 1.05653 | 0.947 |
43DAP/42DAP | 1.06903 | 0.478 |
47DAP/43DAP | 0.99867 | 0.989 |
52DAP/47DAP | 1.19278 | 0.458 |
57DAP/52DAP | 1.08393 | 0.529 |
57DAP/7DAP | 1.05213 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78656 | 0.08 |
17DAP/reference | 0.95178 | 0.338 |
27DAP/reference | 1.1085 | 0.035 |
39DAP/reference | 1.00233 | 0.745 |
41DAP/reference | 1.12105 | 0.767 |
42DAP/reference | 1.0688 | 0.405 |
43DAP/reference | 0.98475 | 0.555 |
47DAP/reference | 0.98975 | 0.671 |
52DAP/reference | 0.94484 | 0.332 |
57DAP/reference | 0.8531 | 0.077 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15013 | 0.308 |
17DAP/reference | 1.04085 | 1 |
27DAP/reference | 1.27716 | 0.072 |
39DAP/reference | 1.04148 | 1 |
41DAP/reference | 0.95655 | 0.432 |
42DAP/reference | 1.47774 | 0.009 |
43DAP/reference | 1.97329 | 0.027 |
47DAP/reference | 1.41178 | 0.017 |
52DAP/reference | 1.34162 | 0.017 |
57DAP/reference | 0.9786 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96022 | 0.422 |
17DAP/reference | 0.98201 | 0.681 |
27DAP/reference | 1.14193 | 0.621 |
39DAP/reference | 1.06179 | 0.67 |
41DAP/reference | 1.22058 | 0.343 |
42DAP/reference | 1.0358 | 0.566 |
43DAP/reference | 0.88283 | 0.267 |
47DAP/reference | 1.17585 | 0.11 |
52DAP/reference | 0.84255 | 0.232 |
57DAP/reference | 1.02441 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12346 | 0.945 |
26DAP/20DAP | 0.89503 | 0.512 |
34DAP/26DAP | 1.04754 | 0.819 |
51DAP/34DAP | 1.14305 | 0.55 |
52DAP/51DAP | 1.15117 | 0.722 |
53DAP/52DAP | 1.03634 | 1 |
55DAP/53DAP | 1.2295 | 0.28 |
57DAP/55DAP | 1.1334 | 0.854 |
62DAP/57DAP | 0.86539 | 0.681 |
68DAP/62DAP | 0.9417 | 0.769 |
68DAP/14DAP | 2.70413 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02292 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.31331 | 0.03 |
Immature Eggplant/Mature Eggplant | 1.3262 | 0.072 |
Ripe Pepper/Ripe Tomato | 1.41892 | 0.256 |
Mature Eggplant/Ripe Tomato | 0.74996 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02165 | 1 |
1-1-2/M82 | 1.01354 | |
12-2/M82 | 1.07764 | 0.61 |
12-4/M82 | 0.9978 | 1 |
1-3/M82 | 1.03276 | |
2-1-1/M82 | 1.49107 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.04909 | 1 |
3-2/M82 | 1.19717 | |
4-1-1/M82 | 0.93643 | 1 |
4-1/M82 | 1.18789 | 0.283 |
4-3-2/M82 | 0.90395 | 0.698 |
4-3/M82 | 1.19888 | |
5-3/M82 | 0.94828 | 1 |
6-2/M82 | 0.95368 | |
6-3/M82 | 1.12136 | 0.971 |
7-1/M82 | 1.10487 | |
7-2/M82 | 1.01583 | 1 |
9-3-2/M82 | 0.92677 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.23713 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.99468 | 1 |
IL12-4/WTpooled | 0.85924 | 1 |
IL1-4/WTpooled | 0.80147 | 0.444 |
WT/WTpooled | 0.92644 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00038 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00946 | 1 |
DC3000/delta hrp 6h | 0.76812 | 0.915 |
DC3000/delta hrp 12h | 0.99912 | 1 |
DC3000/delta hrp 24h | 1.14652 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.42743 | |
DC3000 delta B/DC3000 delta AB | 0.99981 | 0.805 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07949 | 1 |
Exp 36h | 0.9261 | 0.749 |
Exp 60h | 1.10767 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.8862 | |
Var 12h I row2-row1 | 1.10459 | 0.125 |
Var 12h NI row2-row1 | 0.9568 | 1 |
Var 36h I row2-row1 | 0.99659 | |
Var 36h NI row2-row1 | 0.86068 | 0.706 |
Var 60h I row2-row1 | 0.97676 | |
Var 60h NI row2-row1 | 0.92943 | 1 |
Time course 0hI-0hNI | 1.01961 | 1 |
Time course 12hI-12hNI | 0.96821 | 0.836 |
Time course 36hI-36hNI | 0.98906 | 0.718 |
Time course 60hI-60hNI | 0.8401 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03755 | 0.331 |
transgenic ySAMdc/azygous control (breaker) | 1.18065 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.88907 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00211 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.91472 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.99606 | 1 |
Manapal/WT (break) | 1.18089 | 0.183 |
Manapal/WT (red) | 0.97576 | 0.863 |
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