Expression of 1-1-2.1.11.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.174950.798
27DAP/17DAP1.69710.62
39DAP/27DAP1.183270.708
41DAP/39DAP0.819850.387
42DAP/41DAP0.974591
43DAP/42DAP0.943020.664
47DAP/43DAP0.860510.555
52DAP/47DAP1.225510.67
57DAP/52DAP0.901060.845

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.244790.32
17DAP/reference1.042380.74
27DAP/reference1.178640.175
39DAP/reference0.924370.381
41DAP/reference0.920510.154
42DAP/reference1.397430.003
43DAP/reference1.123660.445
47DAP/reference1.131850.391
52DAP/reference1.019061
57DAP/reference0.981080.58

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.866810.277
27DAP/17DAP1.023891
39DAP/27DAP1.059530.626
41DAP/39DAP1.089960.837
42DAP/41DAP0.849030.213
43DAP/42DAP1.09780.351
47DAP/43DAP1.089390.758
52DAP/47DAP1.070750.73
57DAP/52DAP1.177860.293
57DAP/7DAP1.031961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.099610.28
17DAP/reference0.987270.518
27DAP/reference1.026580.974
39DAP/reference1.074580.601
41DAP/reference1.015071
42DAP/reference1.084240.534
43DAP/reference1.370090.007
47DAP/reference1.195030.104
52DAP/reference1.010391
57DAP/reference1.314660.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.036620.874
17DAP/reference1.156140.223
27DAP/reference1.30620.111
39DAP/reference1.174650.239
41DAP/reference1.322150.536
42DAP/reference1.220250.254
43DAP/reference1.250580.15
47DAP/reference1.225660.059
52DAP/reference1.323430.015
57DAP/reference1.075580.827

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.881440.087
17DAP/reference0.933490.417
27DAP/reference0.92960.397
39DAP/reference1.007190.889
41DAP/reference1.005041
42DAP/reference0.891420.049
43DAP/reference1.080040.465
47DAP/reference0.944290.409
52DAP/reference1.147030.601
57DAP/reference1.232510.057

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.072650.966
26DAP/20DAP0.978991
34DAP/26DAP1.095261
51DAP/34DAP0.981980.883
52DAP/51DAP0.999581
53DAP/52DAP1.031290.768
55DAP/53DAP0.989450.864
57DAP/55DAP1.120290.13
62DAP/57DAP0.854960.681
68DAP/62DAP0.844560.464
68DAP/14DAP0.68411

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.776440.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.074490.666
Mature Green Tomato/Ripe Tomato0.500170.132
Immature Eggplant/Mature Eggplant0.870560.086
Ripe Pepper/Ripe Tomato0.969581
Mature Eggplant/Ripe Tomato0.696780.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.899690.883
1-1-2/M820.934941
12-2/M820.973520.955
12-4/M820.986621
1-3/M821.75559
2-1-1/M821.4684
2-1/M820.773630.519
2-6/M821.053831
3-2/M821.41094
4-1-1/M821.060621
4-1/M821.031581
4-3-2/M821.053180.508
4-3/M820.988811
5-3/M820.995931
6-2/M82N/AN/A
6-3/M821.025011
7-1/M821.35450.598
7-2/M821.05441
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.904550.321
IL2-6/WTpooled1.182280.788
IL7-5/WTpooled0.630621
IL7-3/WTpooled0.855920.418
IL12-4/WTpooled1.0261
IL1-4/WTpooled1.005041
WT/WTpooled1.039650.855

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.230630.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.997271
DC3000/delta hrp 6h1.233470.315
DC3000/delta hrp 12h1.089881
DC3000/delta hrp 24h0.884710.319

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.10320.394

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.540120.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.97361
Var 0h1.042341
Var 12h I row2-row11.203020.473
Var 12h NI row2-row10.831080.82
Var 36h I row2-row11.12240.305
Var 36h NI row2-row10.982230.852
Var 60h I row2-row10.978191
Var 60h NI row2-row10.808980.866
Time course 0hI-0hNI1.113580.377
Time course 12hI-12hNI0.959540.716
Time course 36hI-36hNI1.366710.007
Time course 60hI-60hNI1.50560.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.996660.931
transgenic ySAMdc/azygous control (breaker)0.544230.119
transgenic ySAMdc/azygous control (red)0.991141

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.180380.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.944420.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.020251
Manapal/WT (break)0.753670.299
Manapal/WT (red)1.323811