Tomato Functional Genomics Database (TFGD)

Expression of 1-1-2.1.11.4

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.12478	0.779
27DAP/17DAP	0.96222	0.928
39DAP/27DAP	0.8327	0.641
41DAP/39DAP	1.02429	0.88
42DAP/41DAP	1.09689	1
43DAP/42DAP	0.95522	0.887
47DAP/43DAP	1.3491	0.563
52DAP/47DAP	1.63358	0.597
57DAP/52DAP	0.97533	0.971

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.69967	0.025
17DAP/reference	0.90121	0.474
27DAP/reference	0.80164	0.012
39DAP/reference	0.83156	0.035
41DAP/reference	0.99159	1
42DAP/reference	1.20717	0.137
43DAP/reference	1.25671	0.866
47DAP/reference	0.96993	0.473
52DAP/reference	0.81791	0.102
57DAP/reference	0.50831

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.24541	0.406
27DAP/17DAP	1.17902	0.518
39DAP/27DAP	1.13248	0.499
41DAP/39DAP	1.22219	0.763
42DAP/41DAP	0.87129	0.591
43DAP/42DAP	1.2548	0.23
47DAP/43DAP	1.51355	0.749
52DAP/47DAP	1.20266	0.568
57DAP/52DAP	0.72602	0.461
57DAP/7DAP	0.6171	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94367	0.246
17DAP/reference	0.91613	0.167
27DAP/reference	0.91023	0.231
39DAP/reference	0.8203	0.056
41DAP/reference	0.8271	0.064
42DAP/reference	0.69468	0.011
43DAP/reference	0.86359	0.151
47DAP/reference	0.93294	0.293
52DAP/reference	0.90428	0.126
57DAP/reference	1.09573	0.698

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.89371	0.457
17DAP/reference	0.99946	0.693
27DAP/reference	0.91184	0.269
39DAP/reference	0.95953	0.428
41DAP/reference	1.1841	0.781
42DAP/reference	1.26221	0.488
43DAP/reference	1.02304	0.892
47DAP/reference	0.95071	0.359
52DAP/reference	1.02121	0.761
57DAP/reference	1.07259	0.324

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.80793	0.042
17DAP/reference	0.8885	0.313
27DAP/reference	0.87601	0.097
39DAP/reference	0.96556	0.43
41DAP/reference	0.87857	0.293
42DAP/reference	0.70588	0.041
43DAP/reference	0.80344	0.049
47DAP/reference	0.91521	0.335
52DAP/reference	1.3314	0.683
57DAP/reference	1.10603	0.648

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.17176	0.966
26DAP/20DAP	0.85145	1
34DAP/26DAP	1.4844	0.819
51DAP/34DAP	0.56901	0.19
52DAP/51DAP	1.43062	0.163
53DAP/52DAP	1.573	0.413
55DAP/53DAP	1.27772	0.981
57DAP/55DAP	1.75587	0.826
62DAP/57DAP	1.304	0.902
68DAP/62DAP	1.00836	0.863
68DAP/14DAP	1.18062	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.81065	0.019

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.08469
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	0.87852
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.89335	0.321
IL2-6/WTpooled	1.00256	1
IL7-5/WTpooled	1.09114	1
IL7-3/WTpooled	0.90757	0.418
IL12-4/WTpooled	0.88852	1
IL1-4/WTpooled	0.91448	0.444
WT/WTpooled	0.94629	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.98914	1
DC3000/delta hrp 6h	0.71641	0.95
DC3000/delta hrp 12h	0.93192	1
DC3000/delta hrp 24h	0.44593

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	1.17711	0.1

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.00166	1
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	0.64477
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	0.98304
Var 60h NI row2-row1	0.84371
Time course 0hI-0hNI	1.11439	0.833
Time course 12hI-12hNI	0.88648	0.701
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	1.06563	0.673

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.94209	0.362
transgenic ySAMdc/azygous control (breaker)	0.63317	0.173
transgenic ySAMdc/azygous control (red)	1.16452	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.00293	0.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.73094	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.92922	1
Manapal/WT (break)	1.2616	1
Manapal/WT (red)	1.39541	0.133