Tomato Functional Genomics Database (TFGD)

Expression of 1-1-2.1.12.7

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.06089	0.904
27DAP/17DAP	1.53543	0.849
39DAP/27DAP	1.1555	0.938
41DAP/39DAP	1.31201	0.483
42DAP/41DAP	1.04164	1
43DAP/42DAP	1.08945	1
47DAP/43DAP	1.31276	0.364
52DAP/47DAP	1.05757	0.953
57DAP/52DAP	0.88739	0.92

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.08144	0.611
17DAP/reference	1.10018	0.248
27DAP/reference	1.11951	0.721
39DAP/reference	1.30008	0.125
41DAP/reference	1.22168	0.073
42DAP/reference	1.03425	0.901
43DAP/reference	1.0061	0.942
47DAP/reference	0.95137	0.392
52DAP/reference	0.91246	0.382
57DAP/reference	0.89768	0.096

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.2737	0.07
27DAP/17DAP	0.88091	0.295
39DAP/27DAP	0.94408	0.469
41DAP/39DAP	1.18597	0.063
42DAP/41DAP	1.09425	0.378
43DAP/42DAP	0.75533	0.023
47DAP/43DAP	0.9234	0.534
52DAP/47DAP	2.02854	0.048
57DAP/52DAP	2.01482	0.049
57DAP/7DAP	1.14469	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.34308	0.035
17DAP/reference	1.06049	0.627
27DAP/reference	0.99252	0.614
39DAP/reference	1.13113	0.282
41DAP/reference	0.99492	0.709
42DAP/reference	0.86579	0.1
43DAP/reference	0.89702	0.072
47DAP/reference	0.83411	0.504
52DAP/reference	0.98401	0.571
57DAP/reference	1.02848	0.851

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.86584	0.374
17DAP/reference	0.69994	0.201
27DAP/reference	1.00525	1
39DAP/reference	0.92083	0.195
41DAP/reference	0.88659	0.194
42DAP/reference	0.98668	0.594
43DAP/reference	0.9419	0.459
47DAP/reference	1.07854	0.775
52DAP/reference	0.92639
57DAP/reference	1.13909	0.786

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.18901	0.088
17DAP/reference	1.18368	0.317
27DAP/reference	1.05148	0.644
39DAP/reference	1.03943	0.733
41DAP/reference	0.99688	0.826
42DAP/reference	0.857	0.134
43DAP/reference	1.08457	0.555
47DAP/reference	1.18787	0.14
52DAP/reference	1.05256	0.99
57DAP/reference	1.29041	0.046

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.70026
26DAP/20DAP	1.39336	1
34DAP/26DAP	2.48065	1
51DAP/34DAP	1.12981	0.893
52DAP/51DAP	3.73797	0.033
53DAP/52DAP	0.63957	0.049
55DAP/53DAP	1.62688	0.039
57DAP/55DAP	0.48409	0.032
62DAP/57DAP	1.56142	0.098
68DAP/62DAP	3.24865	0.689
68DAP/14DAP	0.99267	0.075

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.23607	0.019

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.87495	0.321
IL2-6/WTpooled	1.05788	1
IL7-5/WTpooled	0.80803	1
IL7-3/WTpooled	0.76546	0.31
IL12-4/WTpooled	0.9581	1
IL1-4/WTpooled	0.8567	0.562
WT/WTpooled	1.05423	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.15379	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.06866	0.921
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.37708
DC3000/delta hrp 24h	0.84805	0.202

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.23736	0.053
DC3000 delta B/DC3000 delta AB	1.66209	0.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.83494	1
Var 12h I row2-row1	0.77421	0.418
Var 12h NI row2-row1	1.00789	1
Var 36h I row2-row1	1.37214	0.339
Var 36h NI row2-row1	0.65574	0.478
Var 60h I row2-row1	0.85434	0.285
Var 60h NI row2-row1	0.84691	0.932
Time course 0hI-0hNI	1.12683	0.764
Time course 12hI-12hNI	0.9079	0.698
Time course 36hI-36hNI	1.51368	0.006
Time course 60hI-60hNI	7.9074	0.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	1.20551	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.84318	0.073

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A