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Expression of 1-1-2.1.12.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.060890.904
27DAP/17DAP1.535430.849
39DAP/27DAP1.15550.938
41DAP/39DAP1.312010.483
42DAP/41DAP1.041641
43DAP/42DAP1.089451
47DAP/43DAP1.312760.364
52DAP/47DAP1.057570.953
57DAP/52DAP0.887390.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.081440.611
17DAP/reference1.100180.248
27DAP/reference1.119510.721
39DAP/reference1.300080.125
41DAP/reference1.221680.073
42DAP/reference1.034250.901
43DAP/reference1.00610.942
47DAP/reference0.951370.392
52DAP/reference0.912460.382
57DAP/reference0.897680.096

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.27370.07
27DAP/17DAP0.880910.295
39DAP/27DAP0.944080.469
41DAP/39DAP1.185970.063
42DAP/41DAP1.094250.378
43DAP/42DAP0.755330.023
47DAP/43DAP0.92340.534
52DAP/47DAP2.028540.048
57DAP/52DAP2.014820.049
57DAP/7DAP1.144691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.343080.035
17DAP/reference1.060490.627
27DAP/reference0.992520.614
39DAP/reference1.131130.282
41DAP/reference0.994920.709
42DAP/reference0.865790.1
43DAP/reference0.897020.072
47DAP/reference0.834110.504
52DAP/reference0.984010.571
57DAP/reference1.028480.851

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.865840.374
17DAP/reference0.699940.201
27DAP/reference1.005251
39DAP/reference0.920830.195
41DAP/reference0.886590.194
42DAP/reference0.986680.594
43DAP/reference0.94190.459
47DAP/reference1.078540.775
52DAP/reference0.92639N/A
57DAP/reference1.139090.786

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.189010.088
17DAP/reference1.183680.317
27DAP/reference1.051480.644
39DAP/reference1.039430.733
41DAP/reference0.996880.826
42DAP/reference0.8570.134
43DAP/reference1.084570.555
47DAP/reference1.187870.14
52DAP/reference1.052560.99
57DAP/reference1.290410.046

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.70026N/A
26DAP/20DAP1.393361
34DAP/26DAP2.480651
51DAP/34DAP1.129810.893
52DAP/51DAP3.737970.033
53DAP/52DAP0.639570.049
55DAP/53DAP1.626880.039
57DAP/55DAP0.484090.032
62DAP/57DAP1.561420.098
68DAP/62DAP3.248650.689
68DAP/14DAP0.992670.075

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.236070.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.874950.321
IL2-6/WTpooled1.057881
IL7-5/WTpooled0.808031
IL7-3/WTpooled0.765460.31
IL12-4/WTpooled0.95811
IL1-4/WTpooled0.85670.562
WT/WTpooled1.054231

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.153791

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.068660.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.37708N/A
DC3000/delta hrp 24h0.848050.202

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.237360.053
DC3000 delta B/DC3000 delta AB1.662090.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.834941
Var 12h I row2-row10.774210.418
Var 12h NI row2-row11.007891
Var 36h I row2-row11.372140.339
Var 36h NI row2-row10.655740.478
Var 60h I row2-row10.854340.285
Var 60h NI row2-row10.846910.932
Time course 0hI-0hNI1.126830.764
Time course 12hI-12hNI0.90790.698
Time course 36hI-36hNI1.513680.006
Time course 60hI-60hNI7.90740.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)1.205510.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.843180.073

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A