Expression of 1-1-2.1.13.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.858840.062
27DAP/17DAP1.333910.683
39DAP/27DAP1.298080.473
41DAP/39DAP0.782840.27
42DAP/41DAP1.042560.994
43DAP/42DAP1.007190.937
47DAP/43DAP1.027480.999
52DAP/47DAP1.77030.226
57DAP/52DAP1.069710.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.847020.071
17DAP/reference1.001941
27DAP/reference1.051340.271
39DAP/reference1.108580.089
41DAP/reference1.078130.014
42DAP/reference1.135720.003
43DAP/reference1.073740.118
47DAP/reference1.28020.001
52DAP/reference1.293680.007
57DAP/reference1.091730.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.620520.036
27DAP/17DAP1.130730.373
39DAP/27DAP0.873840.13
41DAP/39DAP0.832270.512
42DAP/41DAP1.073290.872
43DAP/42DAP0.988050.831
47DAP/43DAP0.990130.947
52DAP/47DAP1.082090.689
57DAP/52DAP0.991330.828
57DAP/7DAP1.467850.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.892220.082
17DAP/reference1.039380.244
27DAP/reference1.084110.049
39DAP/reference1.216260.007
41DAP/reference1.043030.46
42DAP/reference1.103240.024
43DAP/reference1.075450.06
47DAP/reference1.364780.014
52DAP/reference1.137460.043
57DAP/reference1.241180.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.823980.01
17DAP/reference1.106080.136
27DAP/reference1.456320.061
39DAP/reference1.150630.065
41DAP/reference1.381710.118
42DAP/reference1.116070.259
43DAP/reference1.170780.242
47DAP/reference1.072040.274
52DAP/reference1.07850.498
57DAP/reference0.95320.433

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.849190.032
17DAP/reference0.924410.286
27DAP/reference1.107860.12
39DAP/reference1.105740.028
41DAP/reference1.071420.357
42DAP/reference1.220780.018
43DAP/reference1.158160.085
47DAP/reference1.216080.05
52DAP/reference1.203940.057
57DAP/reference1.563150.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.97291
26DAP/20DAP1.12950.615
34DAP/26DAP1.114130.819
51DAP/34DAP1.384240.037
52DAP/51DAP0.712560.151
53DAP/52DAP1.051070.723
55DAP/53DAP1.01051
57DAP/55DAP0.92720.688
62DAP/57DAP2.889750.678
68DAP/62DAP0.867090.641
68DAP/14DAP1.179470.265

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.758670.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.723910.196
Mature Green Tomato/Ripe Tomato0.589250.047
Immature Eggplant/Mature Eggplant0.950360.366
Ripe Pepper/Ripe Tomato0.69880.293
Mature Eggplant/Ripe Tomato0.372910.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.938830.883
1-1-2/M821.085511
12-2/M820.894580.955
12-4/M821.020791
1-3/M821.266481
2-1-1/M821.02591
2-1/M820.976431
2-6/M820.947591
3-2/M821.061830.717
4-1-1/M820.956411
4-1/M821.097841
4-3-2/M820.989421
4-3/M820.924121
5-3/M821.00681
6-2/M820.975820.497
6-3/M820.983211
7-1/M821.041511
7-2/M820.914950.796
9-3-2/M821.141231

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.695320.441
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.712720.298
IL12-4/WTpooled1.048191
IL1-4/WTpooled1.069421
WT/WTpooled1.058381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.109230.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.071270.774
DC3000/delta hrp 6h1.062991
DC3000/delta hrp 12h0.90761
DC3000/delta hrp 24h1.157770.09

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.143580.087
DC3000 delta B/DC3000 delta AB1.060170.457

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.594611
Exp 36h1.117021
Exp 60h1.121661

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.00299
Var 0h0.720730.933
Var 12h I row2-row11.073960.473
Var 12h NI row2-row10.855850.627
Var 36h I row2-row10.967491
Var 36h NI row2-row11.000121
Var 60h I row2-row10.964681
Var 60h NI row2-row11.014821
Time course 0hI-0hNI1.164920.574
Time course 12hI-12hNI0.953090.746
Time course 36hI-36hNI0.9310.344
Time course 60hI-60hNI1.017910.575

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.975380.722
transgenic ySAMdc/azygous control (breaker)1.009621
transgenic ySAMdc/azygous control (red)0.838581

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.20170.086

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.929940.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.65221
Manapal/WT (break)0.79141
Manapal/WT (red)0.759830.181