Expression of 1-1-2.1.13.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.110670.575
27DAP/17DAP1.149930.842
39DAP/27DAP1.012831
41DAP/39DAP1.006270.964
42DAP/41DAP0.988261
43DAP/42DAP1.006691
47DAP/43DAP1.141020.459
52DAP/47DAP0.812980.466
57DAP/52DAP1.106240.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.982820.562
17DAP/reference1.001891
27DAP/reference1.007060.934
39DAP/reference0.956690.575
41DAP/reference0.990770.814
42DAP/reference0.954060.078
43DAP/reference1.011510.787
47DAP/reference0.996210.636
52DAP/reference0.879830.135
57DAP/reference1.005030.767

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.992840.826
27DAP/17DAP0.99290.887
39DAP/27DAP1.002320.862
41DAP/39DAP1.017870.868
42DAP/41DAP0.985770.809
43DAP/42DAP0.984190.558
47DAP/43DAP0.997280.998
52DAP/47DAP0.981840.901
57DAP/52DAP0.987070.793
57DAP/7DAP0.965831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.85080.029
17DAP/reference1.597520.014
27DAP/reference1.380590.01
39DAP/reference1.717920.005
41DAP/reference1.548030.014
42DAP/reference1.45570.021
43DAP/reference1.338860.009
47DAP/reference1.369180.142
52DAP/reference1.374510.021
57DAP/reference1.446330.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.033450.712
17DAP/reference0.982450.487
27DAP/reference1.013961
39DAP/reference0.977240.416
41DAP/reference1.030880.925
42DAP/reference0.974440.482
43DAP/reference0.953430.385
47DAP/reference0.997740.749
52DAP/reference0.976340.28
57DAP/reference0.993780.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.5030.022
17DAP/reference1.074740.602
27DAP/reference1.24780.046
39DAP/reference1.417470.01
41DAP/reference1.222680.054
42DAP/reference1.132050.3
43DAP/reference1.216270.154
47DAP/reference1.00481
52DAP/reference1.344440.153
57DAP/reference1.037631

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.961560.787
26DAP/20DAP1.054230.85
34DAP/26DAP1.014011
51DAP/34DAP0.991010.911
52DAP/51DAP1.008670.873
53DAP/52DAP1.107380.319
55DAP/53DAP1.029060.834
57DAP/55DAP0.837490.356
62DAP/57DAP0.964540.994
68DAP/62DAP1.250220.448
68DAP/14DAP1.063470.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.011060.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.308420.089
Mature Green Tomato/Ripe Tomato1.566570.077
Immature Eggplant/Mature Eggplant2.113520.05
Ripe Pepper/Ripe Tomato1.014181
Mature Eggplant/Ripe Tomato3.183740.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.965540.961
1-1-2/M820.915130.958
12-2/M820.885780.955
12-4/M820.983091
1-3/M820.966261
2-1-1/M820.968790.565
2-1/M820.976181
2-6/M820.91291
3-2/M821.012640.967
4-1-1/M820.985491
4-1/M820.89993
4-3-2/M820.951881
4-3/M820.839250.72
5-3/M821.012441
6-2/M821.005731
6-3/M820.972111
7-1/M821.002881
7-2/M820.912230.796
9-3-2/M820.923780.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.101970.277
IL2-6/WTpooled1.028540.659
IL7-5/WTpooled1.279260.75
IL7-3/WTpooled0.943961
IL12-4/WTpooled1.133290.839
IL1-4/WTpooled0.983221
WT/WTpooled0.976121

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.684680.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.944991
DC3000/delta hrp 6h1.224831
DC3000/delta hrp 12h0.979721
DC3000/delta hrp 24h1.065860.383

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.044730.145
DC3000 delta B/DC3000 delta AB1.068720.433

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.13731
Exp 36h0.879940.749
Exp 60h0.920010.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.984661
Var 0h1.132511
Var 12h I row2-row11.054050.263
Var 12h NI row2-row10.959910.627
Var 36h I row2-row10.980171
Var 36h NI row2-row10.983260.791
Var 60h I row2-row11.022081
Var 60h NI row2-row10.991471
Time course 0hI-0hNI1.068750.833
Time course 12hI-12hNI0.927910.216
Time course 36hI-36hNI0.860860.082
Time course 60hI-60hNI1.356140.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.814420.291
transgenic ySAMdc/azygous control (breaker)1.597770.248
transgenic ySAMdc/azygous control (red)1.159470.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.035680.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.127121

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.435040.172
Manapal/WT (break)1.143340.381
Manapal/WT (red)0.768910.274