Expression of 1-1-2.1.13.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11067 | 0.575 |
27DAP/17DAP | 1.14993 | 0.842 |
39DAP/27DAP | 1.01283 | 1 |
41DAP/39DAP | 1.00627 | 0.964 |
42DAP/41DAP | 0.98826 | 1 |
43DAP/42DAP | 1.00669 | 1 |
47DAP/43DAP | 1.14102 | 0.459 |
52DAP/47DAP | 0.81298 | 0.466 |
57DAP/52DAP | 1.10624 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98282 | 0.562 |
17DAP/reference | 1.00189 | 1 |
27DAP/reference | 1.00706 | 0.934 |
39DAP/reference | 0.95669 | 0.575 |
41DAP/reference | 0.99077 | 0.814 |
42DAP/reference | 0.95406 | 0.078 |
43DAP/reference | 1.01151 | 0.787 |
47DAP/reference | 0.99621 | 0.636 |
52DAP/reference | 0.87983 | 0.135 |
57DAP/reference | 1.00503 | 0.767 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99284 | 0.826 |
27DAP/17DAP | 0.9929 | 0.887 |
39DAP/27DAP | 1.00232 | 0.862 |
41DAP/39DAP | 1.01787 | 0.868 |
42DAP/41DAP | 0.98577 | 0.809 |
43DAP/42DAP | 0.98419 | 0.558 |
47DAP/43DAP | 0.99728 | 0.998 |
52DAP/47DAP | 0.98184 | 0.901 |
57DAP/52DAP | 0.98707 | 0.793 |
57DAP/7DAP | 0.96583 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.8508 | 0.029 |
17DAP/reference | 1.59752 | 0.014 |
27DAP/reference | 1.38059 | 0.01 |
39DAP/reference | 1.71792 | 0.005 |
41DAP/reference | 1.54803 | 0.014 |
42DAP/reference | 1.4557 | 0.021 |
43DAP/reference | 1.33886 | 0.009 |
47DAP/reference | 1.36918 | 0.142 |
52DAP/reference | 1.37451 | 0.021 |
57DAP/reference | 1.44633 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03345 | 0.712 |
17DAP/reference | 0.98245 | 0.487 |
27DAP/reference | 1.01396 | 1 |
39DAP/reference | 0.97724 | 0.416 |
41DAP/reference | 1.03088 | 0.925 |
42DAP/reference | 0.97444 | 0.482 |
43DAP/reference | 0.95343 | 0.385 |
47DAP/reference | 0.99774 | 0.749 |
52DAP/reference | 0.97634 | 0.28 |
57DAP/reference | 0.99378 | 0.754 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.503 | 0.022 |
17DAP/reference | 1.07474 | 0.602 |
27DAP/reference | 1.2478 | 0.046 |
39DAP/reference | 1.41747 | 0.01 |
41DAP/reference | 1.22268 | 0.054 |
42DAP/reference | 1.13205 | 0.3 |
43DAP/reference | 1.21627 | 0.154 |
47DAP/reference | 1.0048 | 1 |
52DAP/reference | 1.34444 | 0.153 |
57DAP/reference | 1.03763 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96156 | 0.787 |
26DAP/20DAP | 1.05423 | 0.85 |
34DAP/26DAP | 1.01401 | 1 |
51DAP/34DAP | 0.99101 | 0.911 |
52DAP/51DAP | 1.00867 | 0.873 |
53DAP/52DAP | 1.10738 | 0.319 |
55DAP/53DAP | 1.02906 | 0.834 |
57DAP/55DAP | 0.83749 | 0.356 |
62DAP/57DAP | 0.96454 | 0.994 |
68DAP/62DAP | 1.25022 | 0.448 |
68DAP/14DAP | 1.06347 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.01106 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.30842 | 0.089 |
Mature Green Tomato/Ripe Tomato | 1.56657 | 0.077 |
Immature Eggplant/Mature Eggplant | 2.11352 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.01418 | 1 |
Mature Eggplant/Ripe Tomato | 3.18374 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96554 | 0.961 |
1-1-2/M82 | 0.91513 | 0.958 |
12-2/M82 | 0.88578 | 0.955 |
12-4/M82 | 0.98309 | 1 |
1-3/M82 | 0.96626 | 1 |
2-1-1/M82 | 0.96879 | 0.565 |
2-1/M82 | 0.97618 | 1 |
2-6/M82 | 0.9129 | 1 |
3-2/M82 | 1.01264 | 0.967 |
4-1-1/M82 | 0.98549 | 1 |
4-1/M82 | 0.89993 | |
4-3-2/M82 | 0.95188 | 1 |
4-3/M82 | 0.83925 | 0.72 |
5-3/M82 | 1.01244 | 1 |
6-2/M82 | 1.00573 | 1 |
6-3/M82 | 0.97211 | 1 |
7-1/M82 | 1.00288 | 1 |
7-2/M82 | 0.91223 | 0.796 |
9-3-2/M82 | 0.92378 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.10197 | 0.277 |
IL2-6/WTpooled | 1.02854 | 0.659 |
IL7-5/WTpooled | 1.27926 | 0.75 |
IL7-3/WTpooled | 0.94396 | 1 |
IL12-4/WTpooled | 1.13329 | 0.839 |
IL1-4/WTpooled | 0.98322 | 1 |
WT/WTpooled | 0.97612 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.68468 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94499 | 1 |
DC3000/delta hrp 6h | 1.22483 | 1 |
DC3000/delta hrp 12h | 0.97972 | 1 |
DC3000/delta hrp 24h | 1.06586 | 0.383 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04473 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.06872 | 0.433 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1373 | 1 |
Exp 36h | 0.87994 | 0.749 |
Exp 60h | 0.92001 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98466 | 1 |
Var 0h | 1.13251 | 1 |
Var 12h I row2-row1 | 1.05405 | 0.263 |
Var 12h NI row2-row1 | 0.95991 | 0.627 |
Var 36h I row2-row1 | 0.98017 | 1 |
Var 36h NI row2-row1 | 0.98326 | 0.791 |
Var 60h I row2-row1 | 1.02208 | 1 |
Var 60h NI row2-row1 | 0.99147 | 1 |
Time course 0hI-0hNI | 1.06875 | 0.833 |
Time course 12hI-12hNI | 0.92791 | 0.216 |
Time course 36hI-36hNI | 0.86086 | 0.082 |
Time course 60hI-60hNI | 1.35614 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.81442 | 0.291 |
transgenic ySAMdc/azygous control (breaker) | 1.59777 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.15947 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03568 | 0.261 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.12712 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.43504 | 0.172 |
Manapal/WT (break) | 1.14334 | 0.381 |
Manapal/WT (red) | 0.76891 | 0.274 |
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