Expression of 1-1-2.1.14.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85314 | 0.381 |
27DAP/17DAP | 0.98669 | 1 |
39DAP/27DAP | 0.93328 | 0.62 |
41DAP/39DAP | 1.21503 | 0.859 |
42DAP/41DAP | 1.07178 | 0.958 |
43DAP/42DAP | 1.05895 | 0.945 |
47DAP/43DAP | 1.63256 | 0.442 |
52DAP/47DAP | 0.92337 | 0.752 |
57DAP/52DAP | 1.11816 | 0.972 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93194 | 0.284 |
17DAP/reference | 1.08946 | 0.306 |
27DAP/reference | 1.00614 | 1 |
39DAP/reference | 1.17057 | 0.075 |
41DAP/reference | 1.05844 | 0.624 |
42DAP/reference | 0.89006 | 0.048 |
43DAP/reference | 1.03429 | 0.812 |
47DAP/reference | 0.99887 | 0.636 |
52DAP/reference | 1.03869 | 1 |
57DAP/reference | 1.08352 | 0.094 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93902 | 0.578 |
27DAP/17DAP | 0.89114 | 0.227 |
39DAP/27DAP | 1.0533 | 0.672 |
41DAP/39DAP | 1.1533 | 0.799 |
42DAP/41DAP | 1.23576 | 0.487 |
43DAP/42DAP | 1.16832 | 0.049 |
47DAP/43DAP | 1.05381 | 0.973 |
52DAP/47DAP | 1.00745 | 0.962 |
57DAP/52DAP | 1.03755 | 1 |
57DAP/7DAP | 0.96595 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82551 | 0.088 |
17DAP/reference | 1.01791 | 0.971 |
27DAP/reference | 1.0629 | 0.371 |
39DAP/reference | 0.82778 | 0.049 |
41DAP/reference | 0.98487 | 0.589 |
42DAP/reference | 0.70158 | 0.169 |
43DAP/reference | 0.95993 | 0.385 |
47DAP/reference | 0.82159 | 0.101 |
52DAP/reference | 0.86051 | 0.15 |
57DAP/reference | 0.8954 | 0.09 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13545 | 0.22 |
17DAP/reference | 1.08075 | 0.658 |
27DAP/reference | 0.94256 | 0.381 |
39DAP/reference | 1.30838 | 0.263 |
41DAP/reference | 1.27886 | 0.122 |
42DAP/reference | 1.02182 | 0.723 |
43DAP/reference | 1.46464 | 0.035 |
47DAP/reference | 1.05528 | 0.159 |
52DAP/reference | 1.1135 | 0.629 |
57DAP/reference | 1.26759 | 0.269 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94417 | 0.362 |
17DAP/reference | 1.0421 | 0.657 |
27DAP/reference | 1.08928 | 0.271 |
39DAP/reference | 1.06161 | 0.65 |
41DAP/reference | 1.01335 | 1 |
42DAP/reference | 0.99938 | 1 |
43DAP/reference | 0.83423 | 0.076 |
47DAP/reference | 0.93905 | 0.383 |
52DAP/reference | 0.84439 | 0.18 |
57DAP/reference | 1.04869 | 0.786 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00259 | 1 |
26DAP/20DAP | 0.9395 | 1 |
34DAP/26DAP | 1.20563 | 1 |
51DAP/34DAP | 1.06983 | 0.949 |
52DAP/51DAP | 0.87322 | 1 |
53DAP/52DAP | 1.16821 | 0.882 |
55DAP/53DAP | 1.29983 | 0.134 |
57DAP/55DAP | 1.02834 | 0.88 |
62DAP/57DAP | 0.76726 | 0.871 |
68DAP/62DAP | 0.88459 | 0.641 |
68DAP/14DAP | 0.74599 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96174 | 0.576 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.85303 | 0.39 |
Mature Green Tomato/Ripe Tomato | 1.48862 | 0.299 |
Immature Eggplant/Mature Eggplant | 1.08994 | 0.363 |
Ripe Pepper/Ripe Tomato | 1.43288 | 1 |
Mature Eggplant/Ripe Tomato | 1.32791 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05517 | 0.877 |
1-1-2/M82 | 1.02187 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.13468 | 1 |
1-3/M82 | 0.59053 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.83068 | 0.501 |
3-2/M82 | 0.89702 | |
4-1-1/M82 | 0.80337 | |
4-1/M82 | 1.37739 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.93947 | |
5-3/M82 | 1.00294 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.043 | |
7-1/M82 | 1.01674 | 1 |
7-2/M82 | 0.73215 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.42695 | 0.277 |
IL2-6/WTpooled | 0.73851 | 0.348 |
IL7-5/WTpooled | 1.07824 | 0.792 |
IL7-3/WTpooled | 1.12823 | 1 |
IL12-4/WTpooled | 1.07073 | 0.546 |
IL1-4/WTpooled | 0.9071 | 0.834 |
WT/WTpooled | 0.99542 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95823 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00974 | 1 |
DC3000/delta hrp 6h | 0.96755 | 0.95 |
DC3000/delta hrp 12h | 0.98652 | 1 |
DC3000/delta hrp 24h | 0.89362 | 0.447 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.32549 | 0.479 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93186 | 1 |
Exp 36h | 0.88583 | 0.406 |
Exp 60h | 1.02944 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.04606 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | 0.92124 | |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 0.97695 | 0.706 |
Var 60h I row2-row1 | 1.0862 | |
Var 60h NI row2-row1 | 1.02847 | 1 |
Time course 0hI-0hNI | 1.01005 | 1 |
Time course 12hI-12hNI | 1.00893 | |
Time course 36hI-36hNI | 0.94343 | 0.494 |
Time course 60hI-60hNI | 0.66625 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99431 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 0.79456 | 0.131 |
transgenic ySAMdc/azygous control (red) | 1.04175 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98058 | 0.393 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8663 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.94163 | 1 |
Manapal/WT (break) | 0.90621 | 1 |
Manapal/WT (red) | 0.95379 | 0.728 |
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