Expression of 1-1-2.1.14.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.853140.381
27DAP/17DAP0.986691
39DAP/27DAP0.933280.62
41DAP/39DAP1.215030.859
42DAP/41DAP1.071780.958
43DAP/42DAP1.058950.945
47DAP/43DAP1.632560.442
52DAP/47DAP0.923370.752
57DAP/52DAP1.118160.972

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.931940.284
17DAP/reference1.089460.306
27DAP/reference1.006141
39DAP/reference1.170570.075
41DAP/reference1.058440.624
42DAP/reference0.890060.048
43DAP/reference1.034290.812
47DAP/reference0.998870.636
52DAP/reference1.038691
57DAP/reference1.083520.094

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.939020.578
27DAP/17DAP0.891140.227
39DAP/27DAP1.05330.672
41DAP/39DAP1.15330.799
42DAP/41DAP1.235760.487
43DAP/42DAP1.168320.049
47DAP/43DAP1.053810.973
52DAP/47DAP1.007450.962
57DAP/52DAP1.037551
57DAP/7DAP0.96595

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.825510.088
17DAP/reference1.017910.971
27DAP/reference1.06290.371
39DAP/reference0.827780.049
41DAP/reference0.984870.589
42DAP/reference0.701580.169
43DAP/reference0.959930.385
47DAP/reference0.821590.101
52DAP/reference0.860510.15
57DAP/reference0.89540.09

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.135450.22
17DAP/reference1.080750.658
27DAP/reference0.942560.381
39DAP/reference1.308380.263
41DAP/reference1.278860.122
42DAP/reference1.021820.723
43DAP/reference1.464640.035
47DAP/reference1.055280.159
52DAP/reference1.11350.629
57DAP/reference1.267590.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.944170.362
17DAP/reference1.04210.657
27DAP/reference1.089280.271
39DAP/reference1.061610.65
41DAP/reference1.013351
42DAP/reference0.999381
43DAP/reference0.834230.076
47DAP/reference0.939050.383
52DAP/reference0.844390.18
57DAP/reference1.048690.786

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.002591
26DAP/20DAP0.93951
34DAP/26DAP1.205631
51DAP/34DAP1.069830.949
52DAP/51DAP0.873221
53DAP/52DAP1.168210.882
55DAP/53DAP1.299830.134
57DAP/55DAP1.028340.88
62DAP/57DAP0.767260.871
68DAP/62DAP0.884590.641
68DAP/14DAP0.74599

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.961740.576

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.853030.39
Mature Green Tomato/Ripe Tomato1.488620.299
Immature Eggplant/Mature Eggplant1.089940.363
Ripe Pepper/Ripe Tomato1.432881
Mature Eggplant/Ripe Tomato1.327910.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.055170.877
1-1-2/M821.02187
12-2/M82N/AN/A
12-4/M821.134681
1-3/M820.59053
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.830680.501
3-2/M820.89702
4-1-1/M820.80337
4-1/M821.37739
4-3-2/M82N/AN/A
4-3/M820.93947
5-3/M821.002941
6-2/M82N/AN/A
6-3/M821.043
7-1/M821.016741
7-2/M820.73215
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.426950.277
IL2-6/WTpooled0.738510.348
IL7-5/WTpooled1.078240.792
IL7-3/WTpooled1.128231
IL12-4/WTpooled1.070730.546
IL1-4/WTpooled0.90710.834
WT/WTpooled0.995421

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.958230.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.009741
DC3000/delta hrp 6h0.967550.95
DC3000/delta hrp 12h0.986521
DC3000/delta hrp 24h0.893620.447

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.325490.479

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.931861
Exp 36h0.885830.406
Exp 60h1.029441

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.046061
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row10.92124
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row10.976950.706
Var 60h I row2-row11.0862
Var 60h NI row2-row11.028471
Time course 0hI-0hNI1.010051
Time course 12hI-12hNI1.00893
Time course 36hI-36hNI0.943430.494
Time course 60hI-60hNI0.666250.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.994310.931
transgenic ySAMdc/azygous control (breaker)0.794560.131
transgenic ySAMdc/azygous control (red)1.041750.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.980580.393

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.86630.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.941631
Manapal/WT (break)0.906211
Manapal/WT (red)0.953790.728