Expression of 1-1-2.1.14.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92582 | 0.568 |
27DAP/17DAP | 0.99032 | 1 |
39DAP/27DAP | 0.93733 | 0.487 |
41DAP/39DAP | 1.06436 | 0.691 |
42DAP/41DAP | 1.08007 | 0.931 |
43DAP/42DAP | 1.12065 | 0.899 |
47DAP/43DAP | 0.96873 | 0.847 |
52DAP/47DAP | 0.98611 | 0.927 |
57DAP/52DAP | 1.04768 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98194 | 0.513 |
17DAP/reference | 1.03674 | 0.122 |
27DAP/reference | 1.01298 | 0.735 |
39DAP/reference | 1.0078 | 0.706 |
41DAP/reference | 0.9611 | 0.542 |
42DAP/reference | 0.94252 | 0.05 |
43DAP/reference | 1.02751 | 0.518 |
47DAP/reference | 1.00649 | 1 |
52DAP/reference | 1.01421 | 0.991 |
57DAP/reference | 1.10619 | 0.016 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98401 | 0.679 |
27DAP/17DAP | 1.04923 | 0.811 |
39DAP/27DAP | 0.99676 | 1 |
41DAP/39DAP | 1.03051 | 0.705 |
42DAP/41DAP | 0.97723 | 0.759 |
43DAP/42DAP | 0.99758 | 1 |
47DAP/43DAP | 0.96474 | 0.525 |
52DAP/47DAP | 0.99788 | 0.975 |
57DAP/52DAP | 1.03127 | 0.825 |
57DAP/7DAP | 1.03801 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9185 | 0.054 |
17DAP/reference | 0.99285 | 0.518 |
27DAP/reference | 1.06305 | 0.049 |
39DAP/reference | 0.92727 | 0.011 |
41DAP/reference | 0.87805 | 0.07 |
42DAP/reference | 0.84988 | 0.01 |
43DAP/reference | 0.95453 | 0.241 |
47DAP/reference | 0.91244 | 0.128 |
52DAP/reference | 0.90604 | 0.106 |
57DAP/reference | 0.90132 | 0.052 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99566 | 0.907 |
17DAP/reference | 0.92233 | 0.109 |
27DAP/reference | 1.02378 | 0.988 |
39DAP/reference | 0.96723 | 0.469 |
41DAP/reference | 1.02934 | 0.96 |
42DAP/reference | 0.90365 | 0.073 |
43DAP/reference | 1.05568 | 0.352 |
47DAP/reference | 0.98013 | 0.473 |
52DAP/reference | 0.97453 | 0.203 |
57DAP/reference | 1.11009 | 0.552 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96246 | 0.268 |
17DAP/reference | 0.97295 | 0.519 |
27DAP/reference | 1.00566 | 0.903 |
39DAP/reference | 0.98355 | 0.464 |
41DAP/reference | 1.0192 | 0.754 |
42DAP/reference | 0.99356 | 0.816 |
43DAP/reference | 0.93562 | 0.216 |
47DAP/reference | 0.90571 | 0.114 |
52DAP/reference | 1.04093 | 0.657 |
57DAP/reference | 0.99303 | 0.73 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01371 | 0.966 |
26DAP/20DAP | 1.01898 | 1 |
34DAP/26DAP | 1.00864 | 1 |
51DAP/34DAP | 1.02185 | 0.814 |
52DAP/51DAP | 0.97381 | 1 |
53DAP/52DAP | 1.09279 | 0.428 |
55DAP/53DAP | 1.02566 | 0.982 |
57DAP/55DAP | 0.82903 | 0.577 |
62DAP/57DAP | 1.16731 | 0.678 |
68DAP/62DAP | 1.04926 | 0.845 |
68DAP/14DAP | 1.06428 | 0.615 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96904 | 0.166 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.95801 | 0.673 |
Mature Green Tomato/Ripe Tomato | 0.89981 | 0.411 |
Immature Eggplant/Mature Eggplant | 1.4503 | 0.057 |
Ripe Pepper/Ripe Tomato | 1.63199 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.88356 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98278 | 0.944 |
1-1-2/M82 | 1.02921 | 1 |
12-2/M82 | 0.84687 | 0.955 |
12-4/M82 | 0.95195 | 1 |
1-3/M82 | 1.02687 | 1 |
2-1-1/M82 | 1.02416 | 1 |
2-1/M82 | 1.03834 | 1 |
2-6/M82 | 0.97633 | 1 |
3-2/M82 | 0.89614 | 1 |
4-1-1/M82 | 1.04206 | 1 |
4-1/M82 | 0.99004 | 1 |
4-3-2/M82 | 0.8918 | 1 |
4-3/M82 | 0.95151 | 1 |
5-3/M82 | 1.01475 | 1 |
6-2/M82 | 1.03754 | 1 |
6-3/M82 | 1.06063 | 1 |
7-1/M82 | 1.03285 | 1 |
7-2/M82 | 0.99055 | 1 |
9-3-2/M82 | 0.93673 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.51698 | 0.277 |
IL2-6/WTpooled | 0.80333 | 0.348 |
IL7-5/WTpooled | 1.24147 | 0.65 |
IL7-3/WTpooled | 1.08259 | 1 |
IL12-4/WTpooled | 1.08553 | 0.553 |
IL1-4/WTpooled | 0.92124 | 0.834 |
WT/WTpooled | 1.00951 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12502 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9751 | 1 |
DC3000/delta hrp 6h | 1.1856 | 1 |
DC3000/delta hrp 12h | 0.97511 | 1 |
DC3000/delta hrp 24h | 0.9858 | 0.934 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05754 | 0.408 |
DC3000 delta B/DC3000 delta AB | 0.98425 | 0.892 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.22717 | 0.254 |
Exp 36h | 1.30571 | 1 |
Exp 60h | 1.36294 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96906 | 1 |
Var 0h | 1.00818 | 1 |
Var 12h I row2-row1 | 1.14303 | 0.235 |
Var 12h NI row2-row1 | 0.9824 | 0.906 |
Var 36h I row2-row1 | 0.93114 | 1 |
Var 36h NI row2-row1 | 0.95628 | 0.645 |
Var 60h I row2-row1 | 1.18779 | 1 |
Var 60h NI row2-row1 | 1.10241 | 0.904 |
Time course 0hI-0hNI | 1.10691 | 0.799 |
Time course 12hI-12hNI | 1.01379 | 0.867 |
Time course 36hI-36hNI | 1.26571 | 0.008 |
Time course 60hI-60hNI | 1.63294 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92682 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 1.36365 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.15335 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96043 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.05871 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88133 | 1 |
Manapal/WT (break) | 0.81459 | 1 |
Manapal/WT (red) | 0.8901 | 0.315 |
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