Expression of 1-1-2.1.14.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.925820.568
27DAP/17DAP0.990321
39DAP/27DAP0.937330.487
41DAP/39DAP1.064360.691
42DAP/41DAP1.080070.931
43DAP/42DAP1.120650.899
47DAP/43DAP0.968730.847
52DAP/47DAP0.986110.927
57DAP/52DAP1.047680.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.981940.513
17DAP/reference1.036740.122
27DAP/reference1.012980.735
39DAP/reference1.00780.706
41DAP/reference0.96110.542
42DAP/reference0.942520.05
43DAP/reference1.027510.518
47DAP/reference1.006491
52DAP/reference1.014210.991
57DAP/reference1.106190.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.984010.679
27DAP/17DAP1.049230.811
39DAP/27DAP0.996761
41DAP/39DAP1.030510.705
42DAP/41DAP0.977230.759
43DAP/42DAP0.997581
47DAP/43DAP0.964740.525
52DAP/47DAP0.997880.975
57DAP/52DAP1.031270.825
57DAP/7DAP1.038011

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.91850.054
17DAP/reference0.992850.518
27DAP/reference1.063050.049
39DAP/reference0.927270.011
41DAP/reference0.878050.07
42DAP/reference0.849880.01
43DAP/reference0.954530.241
47DAP/reference0.912440.128
52DAP/reference0.906040.106
57DAP/reference0.901320.052

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.995660.907
17DAP/reference0.922330.109
27DAP/reference1.023780.988
39DAP/reference0.967230.469
41DAP/reference1.029340.96
42DAP/reference0.903650.073
43DAP/reference1.055680.352
47DAP/reference0.980130.473
52DAP/reference0.974530.203
57DAP/reference1.110090.552

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.962460.268
17DAP/reference0.972950.519
27DAP/reference1.005660.903
39DAP/reference0.983550.464
41DAP/reference1.01920.754
42DAP/reference0.993560.816
43DAP/reference0.935620.216
47DAP/reference0.905710.114
52DAP/reference1.040930.657
57DAP/reference0.993030.73

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.013710.966
26DAP/20DAP1.018981
34DAP/26DAP1.008641
51DAP/34DAP1.021850.814
52DAP/51DAP0.973811
53DAP/52DAP1.092790.428
55DAP/53DAP1.025660.982
57DAP/55DAP0.829030.577
62DAP/57DAP1.167310.678
68DAP/62DAP1.049260.845
68DAP/14DAP1.064280.615

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.969040.166

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.958010.673
Mature Green Tomato/Ripe Tomato0.899810.411
Immature Eggplant/Mature Eggplant1.45030.057
Ripe Pepper/Ripe Tomato1.631990.258
Mature Eggplant/Ripe Tomato1.883560.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.982780.944
1-1-2/M821.029211
12-2/M820.846870.955
12-4/M820.951951
1-3/M821.026871
2-1-1/M821.024161
2-1/M821.038341
2-6/M820.976331
3-2/M820.896141
4-1-1/M821.042061
4-1/M820.990041
4-3-2/M820.89181
4-3/M820.951511
5-3/M821.014751
6-2/M821.037541
6-3/M821.060631
7-1/M821.032851
7-2/M820.990551
9-3-2/M820.936730.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.516980.277
IL2-6/WTpooled0.803330.348
IL7-5/WTpooled1.241470.65
IL7-3/WTpooled1.082591
IL12-4/WTpooled1.085530.553
IL1-4/WTpooled0.921240.834
WT/WTpooled1.009511

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.125021

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.97511
DC3000/delta hrp 6h1.18561
DC3000/delta hrp 12h0.975111
DC3000/delta hrp 24h0.98580.934

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.057540.408
DC3000 delta B/DC3000 delta AB0.984250.892

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.227170.254
Exp 36h1.305711
Exp 60h1.362940.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.969061
Var 0h1.008181
Var 12h I row2-row11.143030.235
Var 12h NI row2-row10.98240.906
Var 36h I row2-row10.931141
Var 36h NI row2-row10.956280.645
Var 60h I row2-row11.187791
Var 60h NI row2-row11.102410.904
Time course 0hI-0hNI1.106910.799
Time course 12hI-12hNI1.013790.867
Time course 36hI-36hNI1.265710.008
Time course 60hI-60hNI1.632940.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.926820.338
transgenic ySAMdc/azygous control (breaker)1.363650.248
transgenic ySAMdc/azygous control (red)1.153350.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.960430.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.058711

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.881331
Manapal/WT (break)0.814591
Manapal/WT (red)0.89010.315