Expression of 1-1-2.1.14.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.577520.082
27DAP/17DAP1.257750.735
39DAP/27DAP1.522390.204
41DAP/39DAP0.858980.475
42DAP/41DAP1.251120.573
43DAP/42DAP1.167070.968
47DAP/43DAP0.8780.603
52DAP/47DAP0.894250.683
57DAP/52DAP1.016640.988

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.83340.097
17DAP/reference1.112010.565
27DAP/reference1.305810.019
39DAP/reference1.02250.842
41DAP/reference1.062660.421
42DAP/reference1.850150.001
43DAP/reference1.32360.008
47DAP/reference1.369490.002
52DAP/reference1.01721
57DAP/reference1.240050.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.861240.038
27DAP/17DAP0.734540.179
39DAP/27DAP2.168760.046
41DAP/39DAP0.803320.398
42DAP/41DAP0.997430.835
43DAP/42DAP1.302280.103
47DAP/43DAP1.064910.897
52DAP/47DAP1.500490.308
57DAP/52DAP2.045990.057
57DAP/7DAP2.255420.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.624930.032
17DAP/reference1.536880.008
27DAP/reference1.441740.008
39DAP/reference1.864470.007
41DAP/reference1.440270.029
42DAP/reference1.505520.012
43DAP/reference2.923520.006
47DAP/reference2.694340.014
52DAP/reference2.441140.007
57DAP/reference2.187360.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.893410.441
17DAP/reference0.813830.052
27DAP/reference1.222550.195
39DAP/reference1.160660.355
41DAP/reference0.891830.11
42DAP/reference1.487320.008
43DAP/reference0.841840.191
47DAP/reference1.176970.065
52DAP/reference0.793780.031
57DAP/reference0.821430.156

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.325720.062
17DAP/reference0.915790.444
27DAP/reference1.720120.02
39DAP/reference1.662850.011
41DAP/reference1.480330.024
42DAP/reference1.887690.013
43DAP/reference1.891060.008
47DAP/reference1.511220.007
52DAP/reference2.258170.03
57DAP/reference1.381190.078

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.064241
26DAP/20DAP1.165670.735
34DAP/26DAP1.002130.998
51DAP/34DAP1.694280.039
52DAP/51DAP0.836591
53DAP/52DAP1.37210.068
55DAP/53DAP0.820480.023
57DAP/55DAP0.750990.084
62DAP/57DAP0.97610.994
68DAP/62DAP0.868610.609
68DAP/14DAP0.975621

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.707380.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.718050.194
Mature Green Tomato/Ripe Tomato0.916540.165
Immature Eggplant/Mature Eggplant1.767020.05
Ripe Pepper/Ripe Tomato0.695860.224
Mature Eggplant/Ripe Tomato0.692311

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.38410.536
1-1-2/M821.364151
12-2/M821.255491
12-4/M821.598461
1-3/M822.689930.248
2-1-1/M820.86740.784
2-1/M820.907120.74
2-6/M821.266070.385
3-2/M821.19220.463
4-1-1/M821.261541
4-1/M821.391571
4-3-2/M821.740740.262
4-3/M821.564851
5-3/M820.73760.395
6-2/M821.54574
6-3/M821.052161
7-1/M820.718770.803
7-2/M821.70750.385
9-3-2/M821.788781

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.667790.247
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.838111
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.999021
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.052871

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.098090.671
DC3000/delta hrp 6h0.841580.95
DC3000/delta hrp 12h1.102011
DC3000/delta hrp 24h1.218270.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.115450.437

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.071321
Exp 36h0.944350.879
Exp 60h0.934280.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.708520.936
Var 12h I row2-row11.766230.204
Var 12h NI row2-row11.167770.649
Var 36h I row2-row10.970361
Var 36h NI row2-row11.945391
Var 60h I row2-row10.956030.952
Var 60h NI row2-row10.98971
Time course 0hI-0hNI1.30103
Time course 12hI-12hNI1.045230.811
Time course 36hI-36hNI0.97345
Time course 60hI-60hNI1.260150.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.005211
transgenic ySAMdc/azygous control (breaker)0.990661
transgenic ySAMdc/azygous control (red)1.117630.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.396480.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.537790.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.940841
Manapal/WT (break)1.001311
Manapal/WT (red)0.870430.199