Expression of 1-1-2.1.14.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.57752 | 0.082 |
27DAP/17DAP | 1.25775 | 0.735 |
39DAP/27DAP | 1.52239 | 0.204 |
41DAP/39DAP | 0.85898 | 0.475 |
42DAP/41DAP | 1.25112 | 0.573 |
43DAP/42DAP | 1.16707 | 0.968 |
47DAP/43DAP | 0.878 | 0.603 |
52DAP/47DAP | 0.89425 | 0.683 |
57DAP/52DAP | 1.01664 | 0.988 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8334 | 0.097 |
17DAP/reference | 1.11201 | 0.565 |
27DAP/reference | 1.30581 | 0.019 |
39DAP/reference | 1.0225 | 0.842 |
41DAP/reference | 1.06266 | 0.421 |
42DAP/reference | 1.85015 | 0.001 |
43DAP/reference | 1.3236 | 0.008 |
47DAP/reference | 1.36949 | 0.002 |
52DAP/reference | 1.0172 | 1 |
57DAP/reference | 1.24005 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.86124 | 0.038 |
27DAP/17DAP | 0.73454 | 0.179 |
39DAP/27DAP | 2.16876 | 0.046 |
41DAP/39DAP | 0.80332 | 0.398 |
42DAP/41DAP | 0.99743 | 0.835 |
43DAP/42DAP | 1.30228 | 0.103 |
47DAP/43DAP | 1.06491 | 0.897 |
52DAP/47DAP | 1.50049 | 0.308 |
57DAP/52DAP | 2.04599 | 0.057 |
57DAP/7DAP | 2.25542 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.62493 | 0.032 |
17DAP/reference | 1.53688 | 0.008 |
27DAP/reference | 1.44174 | 0.008 |
39DAP/reference | 1.86447 | 0.007 |
41DAP/reference | 1.44027 | 0.029 |
42DAP/reference | 1.50552 | 0.012 |
43DAP/reference | 2.92352 | 0.006 |
47DAP/reference | 2.69434 | 0.014 |
52DAP/reference | 2.44114 | 0.007 |
57DAP/reference | 2.18736 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89341 | 0.441 |
17DAP/reference | 0.81383 | 0.052 |
27DAP/reference | 1.22255 | 0.195 |
39DAP/reference | 1.16066 | 0.355 |
41DAP/reference | 0.89183 | 0.11 |
42DAP/reference | 1.48732 | 0.008 |
43DAP/reference | 0.84184 | 0.191 |
47DAP/reference | 1.17697 | 0.065 |
52DAP/reference | 0.79378 | 0.031 |
57DAP/reference | 0.82143 | 0.156 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32572 | 0.062 |
17DAP/reference | 0.91579 | 0.444 |
27DAP/reference | 1.72012 | 0.02 |
39DAP/reference | 1.66285 | 0.011 |
41DAP/reference | 1.48033 | 0.024 |
42DAP/reference | 1.88769 | 0.013 |
43DAP/reference | 1.89106 | 0.008 |
47DAP/reference | 1.51122 | 0.007 |
52DAP/reference | 2.25817 | 0.03 |
57DAP/reference | 1.38119 | 0.078 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06424 | 1 |
26DAP/20DAP | 1.16567 | 0.735 |
34DAP/26DAP | 1.00213 | 0.998 |
51DAP/34DAP | 1.69428 | 0.039 |
52DAP/51DAP | 0.83659 | 1 |
53DAP/52DAP | 1.3721 | 0.068 |
55DAP/53DAP | 0.82048 | 0.023 |
57DAP/55DAP | 0.75099 | 0.084 |
62DAP/57DAP | 0.9761 | 0.994 |
68DAP/62DAP | 0.86861 | 0.609 |
68DAP/14DAP | 0.97562 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.70738 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.71805 | 0.194 |
Mature Green Tomato/Ripe Tomato | 0.91654 | 0.165 |
Immature Eggplant/Mature Eggplant | 1.76702 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.69586 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.69231 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.3841 | 0.536 |
1-1-2/M82 | 1.36415 | 1 |
12-2/M82 | 1.25549 | 1 |
12-4/M82 | 1.59846 | 1 |
1-3/M82 | 2.68993 | 0.248 |
2-1-1/M82 | 0.8674 | 0.784 |
2-1/M82 | 0.90712 | 0.74 |
2-6/M82 | 1.26607 | 0.385 |
3-2/M82 | 1.1922 | 0.463 |
4-1-1/M82 | 1.26154 | 1 |
4-1/M82 | 1.39157 | 1 |
4-3-2/M82 | 1.74074 | 0.262 |
4-3/M82 | 1.56485 | 1 |
5-3/M82 | 0.7376 | 0.395 |
6-2/M82 | 1.54574 | |
6-3/M82 | 1.05216 | 1 |
7-1/M82 | 0.71877 | 0.803 |
7-2/M82 | 1.7075 | 0.385 |
9-3-2/M82 | 1.78878 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.66779 | 0.247 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.83811 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.99902 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05287 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09809 | 0.671 |
DC3000/delta hrp 6h | 0.84158 | 0.95 |
DC3000/delta hrp 12h | 1.10201 | 1 |
DC3000/delta hrp 24h | 1.21827 | 0.743 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.11545 | 0.437 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07132 | 1 |
Exp 36h | 0.94435 | 0.879 |
Exp 60h | 0.93428 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.70852 | 0.936 |
Var 12h I row2-row1 | 1.76623 | 0.204 |
Var 12h NI row2-row1 | 1.16777 | 0.649 |
Var 36h I row2-row1 | 0.97036 | 1 |
Var 36h NI row2-row1 | 1.94539 | 1 |
Var 60h I row2-row1 | 0.95603 | 0.952 |
Var 60h NI row2-row1 | 0.9897 | 1 |
Time course 0hI-0hNI | 1.30103 | |
Time course 12hI-12hNI | 1.04523 | 0.811 |
Time course 36hI-36hNI | 0.97345 | |
Time course 60hI-60hNI | 1.26015 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00521 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.99066 | 1 |
transgenic ySAMdc/azygous control (red) | 1.11763 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.39648 | 0.042 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.53779 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.94084 | 1 |
Manapal/WT (break) | 1.00131 | 1 |
Manapal/WT (red) | 0.87043 | 0.199 |
|
|