Expression of 1-1-2.1.15.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.138610.725
27DAP/17DAP1.101691
39DAP/27DAP0.956860.67
41DAP/39DAP1.4050.363
42DAP/41DAP1.067471
43DAP/42DAP0.945210.877
47DAP/43DAP1.01890.876
52DAP/47DAP1.113030.791
57DAP/52DAP0.990260.976

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.007411
17DAP/reference1.005650.787
27DAP/reference0.981130.567
39DAP/reference0.994850.921
41DAP/reference0.994240.814
42DAP/reference0.927570.023
43DAP/reference1.023040.678
47DAP/reference0.955150.161
52DAP/reference0.876510.093
57DAP/reference0.856250.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.964180.56
27DAP/17DAP1.008140.98
39DAP/27DAP1.003060.874
41DAP/39DAP1.003111
42DAP/41DAP1.025420.916
43DAP/42DAP0.983610.729
47DAP/43DAP1.003570.973
52DAP/47DAP1.003981
57DAP/52DAP1.00271
57DAP/7DAP0.897351

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968350.168
17DAP/reference0.94380.049
27DAP/reference0.97340.2
39DAP/reference0.975730.027
41DAP/reference1.008680.864
42DAP/reference0.948230.05
43DAP/reference0.961480.305
47DAP/reference0.929240.293
52DAP/reference0.961650.332
57DAP/reference0.966110.162

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.067750.213
17DAP/reference1.006390.898
27DAP/reference0.968260.452
39DAP/reference0.941430.289
41DAP/reference0.929990.199
42DAP/reference0.865190.03
43DAP/reference1.080710.396
47DAP/reference0.886310.01
52DAP/reference1.009851
57DAP/reference1.050840.724

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.028690.691
17DAP/reference0.994380.81
27DAP/reference1.016810.805
39DAP/reference1.047280.203
41DAP/reference0.950210.132
42DAP/reference0.908730.134
43DAP/reference0.914320.226
47DAP/reference0.993040.626
52DAP/reference0.945730.376
57DAP/reference0.750260.032

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.830930.89
26DAP/20DAP0.958321
34DAP/26DAP0.910660.462
51DAP/34DAP0.967550.722
52DAP/51DAP1.051170.387
53DAP/52DAP0.958540.807
55DAP/53DAP0.948410.686
57DAP/55DAP1.038631
62DAP/57DAP75.62270.678
68DAP/62DAP0.770380.126
68DAP/14DAP1.021970.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.95490.358

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.963230.059
Mature Green Tomato/Ripe Tomato1.21360.237
Immature Eggplant/Mature Eggplant1.277520.078
Ripe Pepper/Ripe Tomato0.726290.224
Mature Eggplant/Ripe Tomato1.290681

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.950410.944
1-1-2/M820.868850.958
12-2/M821.108081
12-4/M820.97191
1-3/M820.978030.501
2-1-1/M821.080980.764
2-1/M821.12581
2-6/M820.967551
3-2/M820.881380.752
4-1-1/M821.082881
4-1/M820.880831
4-3-2/M820.830690.698
4-3/M821.05931
5-3/M820.981151
6-2/M821.021461
6-3/M821.021481
7-1/M820.59737
7-2/M821.011911
9-3-2/M820.945221

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.07960.493
IL2-6/WTpooled1.066371
IL7-5/WTpooled0.7661
IL7-3/WTpooled0.901910.418
IL12-4/WTpooled1.000181
IL1-4/WTpooled1.336041
WT/WTpooled1.01011

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.023840.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.067030.894
DC3000/delta hrp 6h1.001290.95
DC3000/delta hrp 12h0.946621
DC3000/delta hrp 24h0.984340.957

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.10390.076
DC3000 delta B/DC3000 delta AB1.028580.593

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.037711
Exp 60h1.059821

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.208890.782
Var 12h I row2-row10.873110.705
Var 12h NI row2-row10.804660.546
Var 36h I row2-row10.840220.805
Var 36h NI row2-row11.24924
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row10.735270.335
Time course 0hI-0hNI1.031530.852
Time course 12hI-12hNI0.955240.799
Time course 36hI-36hNI0.930380.476
Time course 60hI-60hNI0.884120.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.982830.789
transgenic ySAMdc/azygous control (breaker)1.197730.178
transgenic ySAMdc/azygous control (red)1.012260.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.030530.204

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.08950.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.847011
Manapal/WT (break)0.956151
Manapal/WT (red)1.19460.222