Expression of 1-1-2.1.15.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13861 | 0.725 |
27DAP/17DAP | 1.10169 | 1 |
39DAP/27DAP | 0.95686 | 0.67 |
41DAP/39DAP | 1.405 | 0.363 |
42DAP/41DAP | 1.06747 | 1 |
43DAP/42DAP | 0.94521 | 0.877 |
47DAP/43DAP | 1.0189 | 0.876 |
52DAP/47DAP | 1.11303 | 0.791 |
57DAP/52DAP | 0.99026 | 0.976 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00741 | 1 |
17DAP/reference | 1.00565 | 0.787 |
27DAP/reference | 0.98113 | 0.567 |
39DAP/reference | 0.99485 | 0.921 |
41DAP/reference | 0.99424 | 0.814 |
42DAP/reference | 0.92757 | 0.023 |
43DAP/reference | 1.02304 | 0.678 |
47DAP/reference | 0.95515 | 0.161 |
52DAP/reference | 0.87651 | 0.093 |
57DAP/reference | 0.85625 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96418 | 0.56 |
27DAP/17DAP | 1.00814 | 0.98 |
39DAP/27DAP | 1.00306 | 0.874 |
41DAP/39DAP | 1.00311 | 1 |
42DAP/41DAP | 1.02542 | 0.916 |
43DAP/42DAP | 0.98361 | 0.729 |
47DAP/43DAP | 1.00357 | 0.973 |
52DAP/47DAP | 1.00398 | 1 |
57DAP/52DAP | 1.0027 | 1 |
57DAP/7DAP | 0.89735 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96835 | 0.168 |
17DAP/reference | 0.9438 | 0.049 |
27DAP/reference | 0.9734 | 0.2 |
39DAP/reference | 0.97573 | 0.027 |
41DAP/reference | 1.00868 | 0.864 |
42DAP/reference | 0.94823 | 0.05 |
43DAP/reference | 0.96148 | 0.305 |
47DAP/reference | 0.92924 | 0.293 |
52DAP/reference | 0.96165 | 0.332 |
57DAP/reference | 0.96611 | 0.162 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06775 | 0.213 |
17DAP/reference | 1.00639 | 0.898 |
27DAP/reference | 0.96826 | 0.452 |
39DAP/reference | 0.94143 | 0.289 |
41DAP/reference | 0.92999 | 0.199 |
42DAP/reference | 0.86519 | 0.03 |
43DAP/reference | 1.08071 | 0.396 |
47DAP/reference | 0.88631 | 0.01 |
52DAP/reference | 1.00985 | 1 |
57DAP/reference | 1.05084 | 0.724 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02869 | 0.691 |
17DAP/reference | 0.99438 | 0.81 |
27DAP/reference | 1.01681 | 0.805 |
39DAP/reference | 1.04728 | 0.203 |
41DAP/reference | 0.95021 | 0.132 |
42DAP/reference | 0.90873 | 0.134 |
43DAP/reference | 0.91432 | 0.226 |
47DAP/reference | 0.99304 | 0.626 |
52DAP/reference | 0.94573 | 0.376 |
57DAP/reference | 0.75026 | 0.032 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.83093 | 0.89 |
26DAP/20DAP | 0.95832 | 1 |
34DAP/26DAP | 0.91066 | 0.462 |
51DAP/34DAP | 0.96755 | 0.722 |
52DAP/51DAP | 1.05117 | 0.387 |
53DAP/52DAP | 0.95854 | 0.807 |
55DAP/53DAP | 0.94841 | 0.686 |
57DAP/55DAP | 1.03863 | 1 |
62DAP/57DAP | 75.6227 | 0.678 |
68DAP/62DAP | 0.77038 | 0.126 |
68DAP/14DAP | 1.02197 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9549 | 0.358 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.96323 | 0.059 |
Mature Green Tomato/Ripe Tomato | 1.2136 | 0.237 |
Immature Eggplant/Mature Eggplant | 1.27752 | 0.078 |
Ripe Pepper/Ripe Tomato | 0.72629 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.29068 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95041 | 0.944 |
1-1-2/M82 | 0.86885 | 0.958 |
12-2/M82 | 1.10808 | 1 |
12-4/M82 | 0.9719 | 1 |
1-3/M82 | 0.97803 | 0.501 |
2-1-1/M82 | 1.08098 | 0.764 |
2-1/M82 | 1.12581 | |
2-6/M82 | 0.96755 | 1 |
3-2/M82 | 0.88138 | 0.752 |
4-1-1/M82 | 1.08288 | 1 |
4-1/M82 | 0.88083 | 1 |
4-3-2/M82 | 0.83069 | 0.698 |
4-3/M82 | 1.0593 | 1 |
5-3/M82 | 0.98115 | 1 |
6-2/M82 | 1.02146 | 1 |
6-3/M82 | 1.02148 | 1 |
7-1/M82 | 0.59737 | |
7-2/M82 | 1.01191 | 1 |
9-3-2/M82 | 0.94522 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0796 | 0.493 |
IL2-6/WTpooled | 1.06637 | 1 |
IL7-5/WTpooled | 0.766 | 1 |
IL7-3/WTpooled | 0.90191 | 0.418 |
IL12-4/WTpooled | 1.00018 | 1 |
IL1-4/WTpooled | 1.33604 | 1 |
WT/WTpooled | 1.0101 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02384 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06703 | 0.894 |
DC3000/delta hrp 6h | 1.00129 | 0.95 |
DC3000/delta hrp 12h | 0.94662 | 1 |
DC3000/delta hrp 24h | 0.98434 | 0.957 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.1039 | 0.076 |
DC3000 delta B/DC3000 delta AB | 1.02858 | 0.593 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.03771 | 1 |
Exp 60h | 1.05982 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.20889 | 0.782 |
Var 12h I row2-row1 | 0.87311 | 0.705 |
Var 12h NI row2-row1 | 0.80466 | 0.546 |
Var 36h I row2-row1 | 0.84022 | 0.805 |
Var 36h NI row2-row1 | 1.24924 | |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 0.73527 | 0.335 |
Time course 0hI-0hNI | 1.03153 | 0.852 |
Time course 12hI-12hNI | 0.95524 | 0.799 |
Time course 36hI-36hNI | 0.93038 | 0.476 |
Time course 60hI-60hNI | 0.88412 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98283 | 0.789 |
transgenic ySAMdc/azygous control (breaker) | 1.19773 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.01226 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03053 | 0.204 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0895 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.84701 | 1 |
Manapal/WT (break) | 0.95615 | 1 |
Manapal/WT (red) | 1.1946 | 0.222 |
|
|