Expression of 1-1-2.1.15.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.928960.617
27DAP/17DAP0.848730.626
39DAP/27DAP1.335340.32
41DAP/39DAP0.984770.868
42DAP/41DAP1.019731
43DAP/42DAP1.247320.991
47DAP/43DAP0.88610.595
52DAP/47DAP0.924460.677
57DAP/52DAP1.223750.941

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.88090.074
17DAP/reference0.841120.021
27DAP/reference0.938610.385
39DAP/reference0.893580.184
41DAP/reference0.713720.008
42DAP/reference0.85110.005
43DAP/reference0.948750.36
47DAP/reference0.91620.127
52DAP/reference1.128460.476
57DAP/reference1.230840.043

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.812470.201
27DAP/17DAP1.261260.287
39DAP/27DAP0.974620.821
41DAP/39DAP1.066020.849
42DAP/41DAP0.88560.353
43DAP/42DAP1.098070.554
47DAP/43DAP1.017560.977
52DAP/47DAP1.00220.941
57DAP/52DAP1.316050.372
57DAP/7DAP0.865021

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.074880.472
17DAP/reference1.108010.162
27DAP/reference0.906560.076
39DAP/reference1.238620.013
41DAP/reference1.096960.191
42DAP/reference1.07340.308
43DAP/reference1.182370.07
47DAP/reference1.052680.659
52DAP/reference1.073990.459
57DAP/reference1.158280.07

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902510.318
17DAP/reference0.868260.099
27DAP/reference0.90490.181
39DAP/reference0.864240.013
41DAP/reference0.89750.156
42DAP/reference0.822390.061
43DAP/reference0.71430.02
47DAP/reference0.749510.037
52DAP/reference0.907570.078
57DAP/reference0.785010.028

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.970080.455
17DAP/reference0.959680.537
27DAP/reference1.496370.51
39DAP/reference0.922540.101
41DAP/reference1.094490.265
42DAP/reference1.060090.671
43DAP/reference0.944360.256
47DAP/reference0.928730.296
52DAP/reference0.976450.663
57DAP/reference1.20710.049

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.288320.916
26DAP/20DAP0.805220.512
34DAP/26DAP1.051281
51DAP/34DAP0.92420.674
52DAP/51DAP1.053520.842
53DAP/52DAP0.941120.75
55DAP/53DAP1.199880.29
57DAP/55DAP0.920070.633
62DAP/57DAP1.15670.723
68DAP/62DAP1.130160.931
68DAP/14DAP1.529970.146

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.923810.341

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.684780.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.3940.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.008011
1-1-2/M820.82627
12-2/M820.81950.955
12-4/M821.052981
1-3/M820.848920.378
2-1-1/M821.18828
2-1/M82N/AN/A
2-6/M821.050690.695
3-2/M820.93292
4-1-1/M821.045171
4-1/M821.28102
4-3-2/M821.07552
4-3/M820.690950.578
5-3/M821.025071
6-2/M82N/AN/A
6-3/M821.52841
7-1/M821.19105
7-2/M820.888210.599
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.952481
IL2-6/WTpooled0.987691
IL7-5/WTpooled0.591771
IL7-3/WTpooled1.402540.362
IL12-4/WTpooled1.402790.367
IL1-4/WTpooled1.033691
WT/WTpooled0.942561

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.941061
DC3000/delta hrp 6h0.927990.95
DC3000/delta hrp 12h0.951261
DC3000/delta hrp 24h1.270140.165

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.846860.162

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.019591
Exp 36h0.896540.749
Exp 60h0.96750.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.957511
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row10.81099
Var 36h NI row2-row11.261821
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row10.69163
Time course 0hI-0hNI0.871350.438
Time course 12hI-12hNI0.835930.05
Time course 36hI-36hNI0.800910.26
Time course 60hI-60hNI0.20170.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.960840.722
transgenic ySAMdc/azygous control (breaker)0.928850.49
transgenic ySAMdc/azygous control (red)1.024160.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.151210.026

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.368930.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.699520.172
Manapal/WT (break)0.932331
Manapal/WT (red)0.699080.242