Expression of 1-1-2.1.15.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92896 | 0.617 |
27DAP/17DAP | 0.84873 | 0.626 |
39DAP/27DAP | 1.33534 | 0.32 |
41DAP/39DAP | 0.98477 | 0.868 |
42DAP/41DAP | 1.01973 | 1 |
43DAP/42DAP | 1.24732 | 0.991 |
47DAP/43DAP | 0.8861 | 0.595 |
52DAP/47DAP | 0.92446 | 0.677 |
57DAP/52DAP | 1.22375 | 0.941 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8809 | 0.074 |
17DAP/reference | 0.84112 | 0.021 |
27DAP/reference | 0.93861 | 0.385 |
39DAP/reference | 0.89358 | 0.184 |
41DAP/reference | 0.71372 | 0.008 |
42DAP/reference | 0.8511 | 0.005 |
43DAP/reference | 0.94875 | 0.36 |
47DAP/reference | 0.9162 | 0.127 |
52DAP/reference | 1.12846 | 0.476 |
57DAP/reference | 1.23084 | 0.043 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81247 | 0.201 |
27DAP/17DAP | 1.26126 | 0.287 |
39DAP/27DAP | 0.97462 | 0.821 |
41DAP/39DAP | 1.06602 | 0.849 |
42DAP/41DAP | 0.8856 | 0.353 |
43DAP/42DAP | 1.09807 | 0.554 |
47DAP/43DAP | 1.01756 | 0.977 |
52DAP/47DAP | 1.0022 | 0.941 |
57DAP/52DAP | 1.31605 | 0.372 |
57DAP/7DAP | 0.86502 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07488 | 0.472 |
17DAP/reference | 1.10801 | 0.162 |
27DAP/reference | 0.90656 | 0.076 |
39DAP/reference | 1.23862 | 0.013 |
41DAP/reference | 1.09696 | 0.191 |
42DAP/reference | 1.0734 | 0.308 |
43DAP/reference | 1.18237 | 0.07 |
47DAP/reference | 1.05268 | 0.659 |
52DAP/reference | 1.07399 | 0.459 |
57DAP/reference | 1.15828 | 0.07 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90251 | 0.318 |
17DAP/reference | 0.86826 | 0.099 |
27DAP/reference | 0.9049 | 0.181 |
39DAP/reference | 0.86424 | 0.013 |
41DAP/reference | 0.8975 | 0.156 |
42DAP/reference | 0.82239 | 0.061 |
43DAP/reference | 0.7143 | 0.02 |
47DAP/reference | 0.74951 | 0.037 |
52DAP/reference | 0.90757 | 0.078 |
57DAP/reference | 0.78501 | 0.028 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97008 | 0.455 |
17DAP/reference | 0.95968 | 0.537 |
27DAP/reference | 1.49637 | 0.51 |
39DAP/reference | 0.92254 | 0.101 |
41DAP/reference | 1.09449 | 0.265 |
42DAP/reference | 1.06009 | 0.671 |
43DAP/reference | 0.94436 | 0.256 |
47DAP/reference | 0.92873 | 0.296 |
52DAP/reference | 0.97645 | 0.663 |
57DAP/reference | 1.2071 | 0.049 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.28832 | 0.916 |
26DAP/20DAP | 0.80522 | 0.512 |
34DAP/26DAP | 1.05128 | 1 |
51DAP/34DAP | 0.9242 | 0.674 |
52DAP/51DAP | 1.05352 | 0.842 |
53DAP/52DAP | 0.94112 | 0.75 |
55DAP/53DAP | 1.19988 | 0.29 |
57DAP/55DAP | 0.92007 | 0.633 |
62DAP/57DAP | 1.1567 | 0.723 |
68DAP/62DAP | 1.13016 | 0.931 |
68DAP/14DAP | 1.52997 | 0.146 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.92381 | 0.341 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.68478 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.394 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00801 | 1 |
1-1-2/M82 | 0.82627 | |
12-2/M82 | 0.8195 | 0.955 |
12-4/M82 | 1.05298 | 1 |
1-3/M82 | 0.84892 | 0.378 |
2-1-1/M82 | 1.18828 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.05069 | 0.695 |
3-2/M82 | 0.93292 | |
4-1-1/M82 | 1.04517 | 1 |
4-1/M82 | 1.28102 | |
4-3-2/M82 | 1.07552 | |
4-3/M82 | 0.69095 | 0.578 |
5-3/M82 | 1.02507 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.52841 | |
7-1/M82 | 1.19105 | |
7-2/M82 | 0.88821 | 0.599 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95248 | 1 |
IL2-6/WTpooled | 0.98769 | 1 |
IL7-5/WTpooled | 0.59177 | 1 |
IL7-3/WTpooled | 1.40254 | 0.362 |
IL12-4/WTpooled | 1.40279 | 0.367 |
IL1-4/WTpooled | 1.03369 | 1 |
WT/WTpooled | 0.94256 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94106 | 1 |
DC3000/delta hrp 6h | 0.92799 | 0.95 |
DC3000/delta hrp 12h | 0.95126 | 1 |
DC3000/delta hrp 24h | 1.27014 | 0.165 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.84686 | 0.162 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.01959 | 1 |
Exp 36h | 0.89654 | 0.749 |
Exp 60h | 0.9675 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95751 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | 0.81099 | |
Var 36h NI row2-row1 | 1.26182 | 1 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 0.69163 | |
Time course 0hI-0hNI | 0.87135 | 0.438 |
Time course 12hI-12hNI | 0.83593 | 0.05 |
Time course 36hI-36hNI | 0.80091 | 0.26 |
Time course 60hI-60hNI | 0.2017 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96084 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 0.92885 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.02416 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.15121 | 0.026 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.36893 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.69952 | 0.172 |
Manapal/WT (break) | 0.93233 | 1 |
Manapal/WT (red) | 0.69908 | 0.242 |
|
|