Expression of 1-1-2.1.16.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76541 | 0.101 |
27DAP/17DAP | 0.88792 | 0.724 |
39DAP/27DAP | 1.12459 | 0.83 |
41DAP/39DAP | 0.63183 | 0.06 |
42DAP/41DAP | 0.7635 | 0.397 |
43DAP/42DAP | 1.20837 | 0.772 |
47DAP/43DAP | 0.60987 | 0.077 |
52DAP/47DAP | 1.07527 | 0.918 |
57DAP/52DAP | 1.08652 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8715 | 0.145 |
17DAP/reference | 0.69867 | 0.009 |
27DAP/reference | 0.86353 | 0.152 |
39DAP/reference | 0.74306 | 0.018 |
41DAP/reference | 0.56767 | 0.008 |
42DAP/reference | 0.90853 | 0.111 |
43DAP/reference | 0.86484 | 0.034 |
47DAP/reference | 0.97633 | 0.473 |
52DAP/reference | 1.086 | 0.607 |
57DAP/reference | 1.19435 | 0.009 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91211 | 0.17 |
27DAP/17DAP | 1.07021 | 0.754 |
39DAP/27DAP | 0.80083 | 0.083 |
41DAP/39DAP | 1.09655 | 0.88 |
42DAP/41DAP | 0.9719 | 0.737 |
43DAP/42DAP | 0.95346 | 0.597 |
47DAP/43DAP | 0.98386 | 0.923 |
52DAP/47DAP | 0.75716 | 0.069 |
57DAP/52DAP | 0.95883 | 0.7 |
57DAP/7DAP | 0.46758 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.10127 | 0.027 |
17DAP/reference | 2.90829 | 0.006 |
27DAP/reference | 2.54944 | 0.006 |
39DAP/reference | 2.31638 | 0.005 |
41DAP/reference | 2.5485 | 0.01 |
42DAP/reference | 2.99356 | 0.006 |
43DAP/reference | 3.72126 | 0.007 |
47DAP/reference | 2.25193 | 0.182 |
52DAP/reference | 2.90937 | 0.007 |
57DAP/reference | 2.83067 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.69921 | 0.023 |
17DAP/reference | 0.63676 | 0.004 |
27DAP/reference | 0.96931 | 0.501 |
39DAP/reference | 1.01168 | 0.702 |
41DAP/reference | 1.144 | 0.146 |
42DAP/reference | 1.04712 | 0.68 |
43DAP/reference | 0.57707 | 0.014 |
47DAP/reference | 0.80924 | 0.017 |
52DAP/reference | 0.88176 | 0.066 |
57DAP/reference | 0.62416 | 0.02 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.35333 | 0.023 |
17DAP/reference | 1.37944 | 0.689 |
27DAP/reference | 2.87513 | 0.021 |
39DAP/reference | 3.01779 | 0.01 |
41DAP/reference | 2.33699 | 0.01 |
42DAP/reference | 3.00456 | 0.007 |
43DAP/reference | 2.51145 | 0.011 |
47DAP/reference | 0.9748 | 0.478 |
52DAP/reference | 3.06808 | 0.225 |
57DAP/reference | 2.82652 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08266 | 0.966 |
26DAP/20DAP | 2.18307 | 0.138 |
34DAP/26DAP | 0.95824 | 0.917 |
51DAP/34DAP | 1.12341 | 0.271 |
52DAP/51DAP | 1.05798 | 0.808 |
53DAP/52DAP | 1.06226 | 0.83 |
55DAP/53DAP | 0.71129 | 0.045 |
57DAP/55DAP | 0.9562 | 0.736 |
62DAP/57DAP | 1.24122 | 0.217 |
68DAP/62DAP | 3.26128 | 0.071 |
68DAP/14DAP | 4.03994 | 0.029 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.01131 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.02286 | 0.666 |
Mature Green Tomato/Ripe Tomato | 1.92714 | 0.237 |
Immature Eggplant/Mature Eggplant | 0.93867 | 0.159 |
Ripe Pepper/Ripe Tomato | 0.63427 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.08992 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94425 | 0.944 |
1-1-2/M82 | 1.05645 | 1 |
12-2/M82 | 0.94852 | |
12-4/M82 | 1.11391 | 1 |
1-3/M82 | 1.04605 | 0.479 |
2-1-1/M82 | 0.90714 | 1 |
2-1/M82 | 0.95981 | 1 |
2-6/M82 | 0.91843 | 1 |
3-2/M82 | 1.45456 | |
4-1-1/M82 | 1.16641 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.81336 | |
4-3/M82 | 1.06138 | 1 |
5-3/M82 | 1.08131 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.07197 | 1 |
7-1/M82 | 1.10991 | 0.992 |
7-2/M82 | 0.87905 | 0.796 |
9-3-2/M82 | 1.44269 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05042 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98351 | 1 |
DC3000/delta hrp 6h | 1.0251 | 1 |
DC3000/delta hrp 12h | 0.98317 | 1 |
DC3000/delta hrp 24h | 1.02253 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.2626 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.4234 | 0.093 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06973 | 0.254 |
Exp 36h | 1.43139 | 0.409 |
Exp 60h | 1.31628 | 0.215 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00308 | 1 |
Var 0h | 1.46171 | 0.936 |
Var 12h I row2-row1 | 0.85548 | 0.338 |
Var 12h NI row2-row1 | 1.11923 | 0.281 |
Var 36h I row2-row1 | 1.24003 | 0.41 |
Var 36h NI row2-row1 | 0.86094 | 0.584 |
Var 60h I row2-row1 | 0.85726 | 0.439 |
Var 60h NI row2-row1 | 0.79969 | 0.756 |
Time course 0hI-0hNI | 1.1206 | 0.603 |
Time course 12hI-12hNI | 0.99089 | 0.984 |
Time course 36hI-36hNI | 1.45029 | 0.01 |
Time course 60hI-60hNI | 1.8482 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08339 | 0.268 |
transgenic ySAMdc/azygous control (breaker) | 1.06467 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97867 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04866 | 0.35 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.07764 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.1292 | 1 |
Manapal/WT (break) | 1.10756 | 0.381 |
Manapal/WT (red) | 1.08754 | 1 |
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