Expression of 1-1-2.1.16.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.765410.101
27DAP/17DAP0.887920.724
39DAP/27DAP1.124590.83
41DAP/39DAP0.631830.06
42DAP/41DAP0.76350.397
43DAP/42DAP1.208370.772
47DAP/43DAP0.609870.077
52DAP/47DAP1.075270.918
57DAP/52DAP1.086520.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.87150.145
17DAP/reference0.698670.009
27DAP/reference0.863530.152
39DAP/reference0.743060.018
41DAP/reference0.567670.008
42DAP/reference0.908530.111
43DAP/reference0.864840.034
47DAP/reference0.976330.473
52DAP/reference1.0860.607
57DAP/reference1.194350.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.912110.17
27DAP/17DAP1.070210.754
39DAP/27DAP0.800830.083
41DAP/39DAP1.096550.88
42DAP/41DAP0.97190.737
43DAP/42DAP0.953460.597
47DAP/43DAP0.983860.923
52DAP/47DAP0.757160.069
57DAP/52DAP0.958830.7
57DAP/7DAP0.467581

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.101270.027
17DAP/reference2.908290.006
27DAP/reference2.549440.006
39DAP/reference2.316380.005
41DAP/reference2.54850.01
42DAP/reference2.993560.006
43DAP/reference3.721260.007
47DAP/reference2.251930.182
52DAP/reference2.909370.007
57DAP/reference2.830670.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.699210.023
17DAP/reference0.636760.004
27DAP/reference0.969310.501
39DAP/reference1.011680.702
41DAP/reference1.1440.146
42DAP/reference1.047120.68
43DAP/reference0.577070.014
47DAP/reference0.809240.017
52DAP/reference0.881760.066
57DAP/reference0.624160.02

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.353330.023
17DAP/reference1.379440.689
27DAP/reference2.875130.021
39DAP/reference3.017790.01
41DAP/reference2.336990.01
42DAP/reference3.004560.007
43DAP/reference2.511450.011
47DAP/reference0.97480.478
52DAP/reference3.068080.225
57DAP/reference2.826520.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.082660.966
26DAP/20DAP2.183070.138
34DAP/26DAP0.958240.917
51DAP/34DAP1.123410.271
52DAP/51DAP1.057980.808
53DAP/52DAP1.062260.83
55DAP/53DAP0.711290.045
57DAP/55DAP0.95620.736
62DAP/57DAP1.241220.217
68DAP/62DAP3.261280.071
68DAP/14DAP4.039940.029

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.011310.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.022860.666
Mature Green Tomato/Ripe Tomato1.927140.237
Immature Eggplant/Mature Eggplant0.938670.159
Ripe Pepper/Ripe Tomato0.634270.224
Mature Eggplant/Ripe Tomato1.089920.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.944250.944
1-1-2/M821.056451
12-2/M820.94852
12-4/M821.113911
1-3/M821.046050.479
2-1-1/M820.907141
2-1/M820.959811
2-6/M820.918431
3-2/M821.45456
4-1-1/M821.16641
4-1/M82N/AN/A
4-3-2/M820.81336
4-3/M821.061381
5-3/M821.081311
6-2/M82N/AN/A
6-3/M821.071971
7-1/M821.109910.992
7-2/M820.879050.796
9-3-2/M821.44269

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.050421

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.983511
DC3000/delta hrp 6h1.02511
DC3000/delta hrp 12h0.983171
DC3000/delta hrp 24h1.022531

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.26260.042
DC3000 delta B/DC3000 delta AB1.42340.093

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.069730.254
Exp 36h1.431390.409
Exp 60h1.316280.215

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.003081
Var 0h1.461710.936
Var 12h I row2-row10.855480.338
Var 12h NI row2-row11.119230.281
Var 36h I row2-row11.240030.41
Var 36h NI row2-row10.860940.584
Var 60h I row2-row10.857260.439
Var 60h NI row2-row10.799690.756
Time course 0hI-0hNI1.12060.603
Time course 12hI-12hNI0.990890.984
Time course 36hI-36hNI1.450290.01
Time course 60hI-60hNI1.84820.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.083390.268
transgenic ySAMdc/azygous control (breaker)1.064671
transgenic ySAMdc/azygous control (red)0.978671

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.048660.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.077641

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.12921
Manapal/WT (break)1.107560.381
Manapal/WT (red)1.087541