Expression of 1-1-2.1.18.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.842830.339
27DAP/17DAP1.209940.845
39DAP/27DAP1.449920.533
41DAP/39DAP1.23970.735
42DAP/41DAP0.76630.774
43DAP/42DAP1.108881
47DAP/43DAP1.093620.873
52DAP/47DAP1.180250.819
57DAP/52DAP0.676210.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.985380.601
17DAP/reference0.996350.957
27DAP/reference1.013640.82
39DAP/reference1.007180.734
41DAP/reference0.896830.154
42DAP/reference1.025790.431
43DAP/reference0.95270.18
47DAP/reference1.049590.175
52DAP/reference1.184060.102
57DAP/reference1.081340.118

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.061230.841
27DAP/17DAP1.120320.909
39DAP/27DAP1.315090.178
41DAP/39DAP0.959470.893
42DAP/41DAP0.936330.576
43DAP/42DAP1.186790.162
47DAP/43DAP1.026490.939
52DAP/47DAP0.946380.824
57DAP/52DAP1.06230.806
57DAP/7DAP1.25525

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.010681
17DAP/reference1.035991
27DAP/reference1.018820.974
39DAP/reference1.148210.069
41DAP/reference0.988550.619
42DAP/reference1.108140.1
43DAP/reference1.049010.923
47DAP/reference1.014991
52DAP/reference1.081490.428
57DAP/reference1.102150.198

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965760.592
17DAP/reference0.876190.007
27DAP/reference1.000840.79
39DAP/reference1.044470.935
41DAP/reference0.941740.268
42DAP/reference0.909320.135
43DAP/reference1.0010.846
47DAP/reference0.912650.073
52DAP/reference0.936470.066
57DAP/reference0.927580.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.0221
17DAP/reference1.01251
27DAP/reference1.059170.373
39DAP/reference1.075480.483
41DAP/reference1.030850.818
42DAP/reference0.955120.552
43DAP/reference1.061140.452
47DAP/reference0.972040.452
52DAP/reference0.936590.505
57DAP/reference1.123280.592

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.047750.966
26DAP/20DAP0.906531
34DAP/26DAP1.081941
51DAP/34DAP1.079230.911
52DAP/51DAP0.846731
53DAP/52DAP1.034820.97
55DAP/53DAP0.992220.876
57DAP/55DAP0.993050.925
62DAP/57DAP0.806380.28
68DAP/62DAP1.000020.885
68DAP/14DAP1.104870.366

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.722080.108

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.133520.287
Mature Green Tomato/Ripe Tomato0.165450.017
Immature Eggplant/Mature Eggplant1.103260.205
Ripe Pepper/Ripe Tomato0.927071
Mature Eggplant/Ripe Tomato1.149111

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.246580.536
1-1-2/M821.199351
12-2/M82N/AN/A
12-4/M820.917560.358
1-3/M821.000011
2-1-1/M821.32657
2-1/M82N/AN/A
2-6/M820.944061
3-2/M820.99666
4-1-1/M820.97155
4-1/M820.75997
4-3-2/M82N/AN/A
4-3/M820.966281
5-3/M821.007331
6-2/M82N/AN/A
6-3/M821.061621
7-1/M821.11734
7-2/M821.09047
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.153560.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.033750.921
DC3000/delta hrp 6h1.061891
DC3000/delta hrp 12h1.014891
DC3000/delta hrp 24h0.945670.67

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.933050.805

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.77191
Exp 36h0.935370.82
Exp 60h1.039721

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.051921
Var 0h0.83862
Var 12h I row2-row11.047840.406
Var 12h NI row2-row10.92228
Var 36h I row2-row11.060070.742
Var 36h NI row2-row11.082381
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row10.680121
Time course 0hI-0hNI1.057110.799
Time course 12hI-12hNI1.273620.36
Time course 36hI-36hNI1.104380.166
Time course 60hI-60hNI1.949770.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.044470.384
transgenic ySAMdc/azygous control (breaker)0.664640.119
transgenic ySAMdc/azygous control (red)1.163470.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.020910.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.81540.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.98291
Manapal/WT (break)0.783471
Manapal/WT (red)0.704470.216