Expression of 1-1-2.1.18.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12102 | 0.697 |
27DAP/17DAP | 1.11223 | 0.849 |
39DAP/27DAP | 0.98269 | 0.769 |
41DAP/39DAP | 1.04272 | 0.372 |
42DAP/41DAP | 1.05849 | 0.899 |
43DAP/42DAP | 1.08752 | 0.894 |
47DAP/43DAP | 1.04338 | 0.702 |
52DAP/47DAP | 0.96629 | 0.889 |
57DAP/52DAP | 0.92956 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93731 | 0.097 |
17DAP/reference | 1.05931 | 0.148 |
27DAP/reference | 1.00386 | 1 |
39DAP/reference | 1.10933 | 0.032 |
41DAP/reference | 1.08005 | 0.133 |
42DAP/reference | 0.99663 | 0.587 |
43DAP/reference | 1.07113 | 0.069 |
47DAP/reference | 1.09192 | 0.11 |
52DAP/reference | 1.15676 | 0.05 |
57DAP/reference | 1.04587 | 0.496 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97476 | 0.763 |
27DAP/17DAP | 1.00685 | 1 |
39DAP/27DAP | 0.98265 | 0.859 |
41DAP/39DAP | 1.00918 | 0.921 |
42DAP/41DAP | 0.94667 | 0.515 |
43DAP/42DAP | 0.99632 | 1 |
47DAP/43DAP | 1.00489 | 0.973 |
52DAP/47DAP | 1.01382 | 0.945 |
57DAP/52DAP | 0.94014 | 0.498 |
57DAP/7DAP | 0.90255 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87009 | 0.296 |
17DAP/reference | 1.03203 | 0.693 |
27DAP/reference | 1.00406 | 0.8 |
39DAP/reference | 1.04079 | 0.96 |
41DAP/reference | 0.8805 | 0.223 |
42DAP/reference | 1.16684 | 0.405 |
43DAP/reference | 0.94414 | 0.44 |
47DAP/reference | 1.19659 | 0.377 |
52DAP/reference | 1.21773 | 0.139 |
57DAP/reference | 0.74389 | 0.019 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89784 | 0.14 |
17DAP/reference | 0.92181 | 0.052 |
27DAP/reference | 0.9676 | 0.452 |
39DAP/reference | 1.10222 | 0.657 |
41DAP/reference | 0.97933 | 0.459 |
42DAP/reference | 0.96686 | 0.433 |
43DAP/reference | 1.06318 | 0.793 |
47DAP/reference | 1.00674 | 0.749 |
52DAP/reference | 1.0831 | 0.085 |
57DAP/reference | 1.14846 | 0.112 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.71341 | 0.082 |
17DAP/reference | 0.8598 | 0.281 |
27DAP/reference | 1.10742 | 0.695 |
39DAP/reference | 1.13828 | 0.108 |
41DAP/reference | 1.86481 | 0.276 |
42DAP/reference | 0.82463 | 0.015 |
43DAP/reference | 1.20106 | 0.565 |
47DAP/reference | 0.93001 | 0.168 |
52DAP/reference | 0.91085 | 0.327 |
57DAP/reference | 0.90933 | 0.288 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98098 | 1 |
26DAP/20DAP | 0.9648 | 0.512 |
34DAP/26DAP | 1.01889 | 1 |
51DAP/34DAP | 1.04258 | 0.854 |
52DAP/51DAP | 0.99574 | 1 |
53DAP/52DAP | 1.07282 | 0.806 |
55DAP/53DAP | 1.12696 | 0.79 |
57DAP/55DAP | 1.12826 | 0.525 |
62DAP/57DAP | 0.92044 | 0.994 |
68DAP/62DAP | 1.6894 | 0.36 |
68DAP/14DAP | 1.09107 | 0.636 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97577 | 0.547 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.23236 | 0.075 |
Mature Green Tomato/Ripe Tomato | 0.95431 | 0.522 |
Immature Eggplant/Mature Eggplant | 0.5988 | 0.062 |
Ripe Pepper/Ripe Tomato | 0.1736 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.16486 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.66453 | 0.605 |
1-1-2/M82 | 1.05822 | 1 |
12-2/M82 | 1.01545 | 1 |
12-4/M82 | 0.84897 | 0.33 |
1-3/M82 | 1.20998 | 1 |
2-1-1/M82 | 0.88997 | 0.784 |
2-1/M82 | 1.11067 | 1 |
2-6/M82 | 0.73606 | 0.501 |
3-2/M82 | 0.88 | 0.752 |
4-1-1/M82 | 0.66792 | 0.962 |
4-1/M82 | 0.94359 | 1 |
4-3-2/M82 | 0.88789 | 1 |
4-3/M82 | 0.47325 | 0.273 |
5-3/M82 | 1.3116 | 0.572 |
6-2/M82 | 0.69982 | 0.481 |
6-3/M82 | 1.09456 | 1 |
7-1/M82 | 1.02036 | 1 |
7-2/M82 | 0.74785 | 0.881 |
9-3-2/M82 | 0.95889 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.21453 | 0.277 |
IL2-6/WTpooled | 1.01217 | 1 |
IL7-5/WTpooled | 1.32691 | 0.792 |
IL7-3/WTpooled | 1.30262 | 0.362 |
IL12-4/WTpooled | 1.04637 | 1 |
IL1-4/WTpooled | 1.17582 | 1 |
WT/WTpooled | 0.96662 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.31178 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92284 | 1 |
DC3000/delta hrp 6h | 0.89026 | 0.95 |
DC3000/delta hrp 12h | 1.0656 | 1 |
DC3000/delta hrp 24h | 0.93822 | 0.554 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.00774 | 0.648 |
DC3000 delta B/DC3000 delta AB | 0.96396 | 0.497 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.11524 | 1 |
Exp 36h | 1.0328 | 1 |
Exp 60h | 1.16369 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.98195 | 1 |
Var 12h I row2-row1 | 0.9664 | 0.856 |
Var 12h NI row2-row1 | 1.01238 | 1 |
Var 36h I row2-row1 | 1.37425 | 0.908 |
Var 36h NI row2-row1 | 1.1449 | 1 |
Var 60h I row2-row1 | 2.08157 | 1 |
Var 60h NI row2-row1 | 1.01347 | 1 |
Time course 0hI-0hNI | 1.15819 | 0.852 |
Time course 12hI-12hNI | 1.00453 | 1 |
Time course 36hI-36hNI | 0.98834 | 0.665 |
Time course 60hI-60hNI | 1.00253 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.80815 | 0.32 |
transgenic ySAMdc/azygous control (breaker) | 0.53793 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.99158 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00314 | 0.854 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.84685 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83119 | 0.172 |
Manapal/WT (break) | 0.56578 | 0.333 |
Manapal/WT (red) | 0.75645 | 0.199 |
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