Expression of 1-1-2.1.18.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.121020.697
27DAP/17DAP1.112230.849
39DAP/27DAP0.982690.769
41DAP/39DAP1.042720.372
42DAP/41DAP1.058490.899
43DAP/42DAP1.087520.894
47DAP/43DAP1.043380.702
52DAP/47DAP0.966290.889
57DAP/52DAP0.929560.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.937310.097
17DAP/reference1.059310.148
27DAP/reference1.003861
39DAP/reference1.109330.032
41DAP/reference1.080050.133
42DAP/reference0.996630.587
43DAP/reference1.071130.069
47DAP/reference1.091920.11
52DAP/reference1.156760.05
57DAP/reference1.045870.496

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.974760.763
27DAP/17DAP1.006851
39DAP/27DAP0.982650.859
41DAP/39DAP1.009180.921
42DAP/41DAP0.946670.515
43DAP/42DAP0.996321
47DAP/43DAP1.004890.973
52DAP/47DAP1.013820.945
57DAP/52DAP0.940140.498
57DAP/7DAP0.902551

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.870090.296
17DAP/reference1.032030.693
27DAP/reference1.004060.8
39DAP/reference1.040790.96
41DAP/reference0.88050.223
42DAP/reference1.166840.405
43DAP/reference0.944140.44
47DAP/reference1.196590.377
52DAP/reference1.217730.139
57DAP/reference0.743890.019

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.897840.14
17DAP/reference0.921810.052
27DAP/reference0.96760.452
39DAP/reference1.102220.657
41DAP/reference0.979330.459
42DAP/reference0.966860.433
43DAP/reference1.063180.793
47DAP/reference1.006740.749
52DAP/reference1.08310.085
57DAP/reference1.148460.112

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.713410.082
17DAP/reference0.85980.281
27DAP/reference1.107420.695
39DAP/reference1.138280.108
41DAP/reference1.864810.276
42DAP/reference0.824630.015
43DAP/reference1.201060.565
47DAP/reference0.930010.168
52DAP/reference0.910850.327
57DAP/reference0.909330.288

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.980981
26DAP/20DAP0.96480.512
34DAP/26DAP1.018891
51DAP/34DAP1.042580.854
52DAP/51DAP0.995741
53DAP/52DAP1.072820.806
55DAP/53DAP1.126960.79
57DAP/55DAP1.128260.525
62DAP/57DAP0.920440.994
68DAP/62DAP1.68940.36
68DAP/14DAP1.091070.636

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.975770.547

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.232360.075
Mature Green Tomato/Ripe Tomato0.954310.522
Immature Eggplant/Mature Eggplant0.59880.062
Ripe Pepper/Ripe Tomato0.17360.224
Mature Eggplant/Ripe Tomato0.164860.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.664530.605
1-1-2/M821.058221
12-2/M821.015451
12-4/M820.848970.33
1-3/M821.209981
2-1-1/M820.889970.784
2-1/M821.110671
2-6/M820.736060.501
3-2/M820.880.752
4-1-1/M820.667920.962
4-1/M820.943591
4-3-2/M820.887891
4-3/M820.473250.273
5-3/M821.31160.572
6-2/M820.699820.481
6-3/M821.094561
7-1/M821.020361
7-2/M820.747850.881
9-3-2/M820.958890.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.214530.277
IL2-6/WTpooled1.012171
IL7-5/WTpooled1.326910.792
IL7-3/WTpooled1.302620.362
IL12-4/WTpooled1.046371
IL1-4/WTpooled1.175821
WT/WTpooled0.966621

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.311781

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.922841
DC3000/delta hrp 6h0.890260.95
DC3000/delta hrp 12h1.06561
DC3000/delta hrp 24h0.938220.554

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.007740.648
DC3000 delta B/DC3000 delta AB0.963960.497

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.115241
Exp 36h1.03281
Exp 60h1.163690.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.981951
Var 12h I row2-row10.96640.856
Var 12h NI row2-row11.012381
Var 36h I row2-row11.374250.908
Var 36h NI row2-row11.14491
Var 60h I row2-row12.081571
Var 60h NI row2-row11.013471
Time course 0hI-0hNI1.158190.852
Time course 12hI-12hNI1.004531
Time course 36hI-36hNI0.988340.665
Time course 60hI-60hNI1.002531

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.808150.32
transgenic ySAMdc/azygous control (breaker)0.537930.142
transgenic ySAMdc/azygous control (red)0.991581

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.003140.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.846850.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.831190.172
Manapal/WT (break)0.565780.333
Manapal/WT (red)0.756450.199