Expression of 1-1-2.1.18.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.945020.64
27DAP/17DAP1.169130.829
39DAP/27DAP1.049260.84
41DAP/39DAP1.04290.806
42DAP/41DAP1.008761
43DAP/42DAP0.988730.937
47DAP/43DAP1.005721
52DAP/47DAP1.161940.702
57DAP/52DAP0.951910.932

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.09310.252
17DAP/reference0.975740.503
27DAP/reference1.015110.794
39DAP/reference1.000880.92
41DAP/reference1.118380.111
42DAP/reference1.116120.001
43DAP/reference0.986860.763
47DAP/reference1.02850.627
52DAP/reference1.100940.128
57DAP/reference0.935540.156

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.05870.65
27DAP/17DAP1.05380.909
39DAP/27DAP1.045180.677
41DAP/39DAP1.030171
42DAP/41DAP0.975760.768
43DAP/42DAP1.017730.83
47DAP/43DAP1.047790.822
52DAP/47DAP0.989760.93
57DAP/52DAP0.971740.603
57DAP/7DAP1.090391

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.951440.183
17DAP/reference0.961020.108
27DAP/reference0.942070.015
39DAP/reference0.976870.146
41DAP/reference0.948790.047
42DAP/reference0.986610.436
43DAP/reference0.966740.047
47DAP/reference0.936980.222
52DAP/reference0.999420.802
57DAP/reference0.974480.191

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.04750.22
17DAP/reference1.086780.094
27DAP/reference1.052450.648
39DAP/reference1.026270.978
41DAP/reference0.926940.268
42DAP/reference1.151670.153
43DAP/reference1.120860.114
47DAP/reference1.065830.264
52DAP/reference1.074120.079
57DAP/reference1.121560.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.004151
17DAP/reference1.041470.585
27DAP/reference1.015270.834
39DAP/reference0.984070.43
41DAP/reference0.974950.264
42DAP/reference0.973070.445
43DAP/reference0.999520.858
47DAP/reference1.07190.372
52DAP/reference0.934850.31
57DAP/reference0.885850.069

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.949771
26DAP/20DAP0.878960.512
34DAP/26DAP1.002191
51DAP/34DAP0.995750.937
52DAP/51DAP1.085910.387
53DAP/52DAP1.078130.678
55DAP/53DAP1.132970.429
57DAP/55DAP1.001230.968
62DAP/57DAP1.099350.158
68DAP/62DAP0.891940.429
68DAP/14DAP0.954231

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.023181

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.784370.286
Mature Green Tomato/Ripe Tomato0.884430.256
Immature Eggplant/Mature Eggplant1.722190.053
Ripe Pepper/Ripe Tomato1.182241
Mature Eggplant/Ripe Tomato1.174631

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.893660.907
1-1-2/M82N/AN/A
12-2/M821.040741
12-4/M820.978081
1-3/M820.928771
2-1-1/M821.13876
2-1/M82N/AN/A
2-6/M821.051320.695
3-2/M821.035610.967
4-1-1/M821.043511
4-1/M820.868051
4-3-2/M820.990041
4-3/M820.80982
5-3/M820.995381
6-2/M820.87541
6-3/M821.053081
7-1/M820.91829
7-2/M821.044271
9-3-2/M820.912971

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.770960.243
IL2-6/WTpooled1.364870.659
IL7-5/WTpooled1.361881
IL7-3/WTpooled0.90761
IL12-4/WTpooled1.113370.839
IL1-4/WTpooled1.04481
WT/WTpooled1.006731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.186120.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.039680.921
DC3000/delta hrp 6h1.77409
DC3000/delta hrp 12h1.057671
DC3000/delta hrp 24h1.096540.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.094320.408
DC3000 delta B/DC3000 delta AB1.03270.738

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.604920.205

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.96884
Var 0h0.706551
Var 12h I row2-row11.237590.254
Var 12h NI row2-row10.905890.713
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row10.960270.791
Var 60h I row2-row10.902430.439
Var 60h NI row2-row11.212640.904
Time course 0hI-0hNI1.057970.799
Time course 12hI-12hNI1.109530.507
Time course 36hI-36hNI1.687260.248
Time course 60hI-60hNI2.21970.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.237510.228
transgenic ySAMdc/azygous control (breaker)0.959481
transgenic ySAMdc/azygous control (red)1.08670.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.993290.588

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.995561

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.025571
Manapal/WT (break)0.816160.333
Manapal/WT (red)0.887020.503