Expression of 1-1-2.1.18.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94502 | 0.64 |
27DAP/17DAP | 1.16913 | 0.829 |
39DAP/27DAP | 1.04926 | 0.84 |
41DAP/39DAP | 1.0429 | 0.806 |
42DAP/41DAP | 1.00876 | 1 |
43DAP/42DAP | 0.98873 | 0.937 |
47DAP/43DAP | 1.00572 | 1 |
52DAP/47DAP | 1.16194 | 0.702 |
57DAP/52DAP | 0.95191 | 0.932 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0931 | 0.252 |
17DAP/reference | 0.97574 | 0.503 |
27DAP/reference | 1.01511 | 0.794 |
39DAP/reference | 1.00088 | 0.92 |
41DAP/reference | 1.11838 | 0.111 |
42DAP/reference | 1.11612 | 0.001 |
43DAP/reference | 0.98686 | 0.763 |
47DAP/reference | 1.0285 | 0.627 |
52DAP/reference | 1.10094 | 0.128 |
57DAP/reference | 0.93554 | 0.156 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0587 | 0.65 |
27DAP/17DAP | 1.0538 | 0.909 |
39DAP/27DAP | 1.04518 | 0.677 |
41DAP/39DAP | 1.03017 | 1 |
42DAP/41DAP | 0.97576 | 0.768 |
43DAP/42DAP | 1.01773 | 0.83 |
47DAP/43DAP | 1.04779 | 0.822 |
52DAP/47DAP | 0.98976 | 0.93 |
57DAP/52DAP | 0.97174 | 0.603 |
57DAP/7DAP | 1.09039 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95144 | 0.183 |
17DAP/reference | 0.96102 | 0.108 |
27DAP/reference | 0.94207 | 0.015 |
39DAP/reference | 0.97687 | 0.146 |
41DAP/reference | 0.94879 | 0.047 |
42DAP/reference | 0.98661 | 0.436 |
43DAP/reference | 0.96674 | 0.047 |
47DAP/reference | 0.93698 | 0.222 |
52DAP/reference | 0.99942 | 0.802 |
57DAP/reference | 0.97448 | 0.191 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0475 | 0.22 |
17DAP/reference | 1.08678 | 0.094 |
27DAP/reference | 1.05245 | 0.648 |
39DAP/reference | 1.02627 | 0.978 |
41DAP/reference | 0.92694 | 0.268 |
42DAP/reference | 1.15167 | 0.153 |
43DAP/reference | 1.12086 | 0.114 |
47DAP/reference | 1.06583 | 0.264 |
52DAP/reference | 1.07412 | 0.079 |
57DAP/reference | 1.12156 | 0.135 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00415 | 1 |
17DAP/reference | 1.04147 | 0.585 |
27DAP/reference | 1.01527 | 0.834 |
39DAP/reference | 0.98407 | 0.43 |
41DAP/reference | 0.97495 | 0.264 |
42DAP/reference | 0.97307 | 0.445 |
43DAP/reference | 0.99952 | 0.858 |
47DAP/reference | 1.0719 | 0.372 |
52DAP/reference | 0.93485 | 0.31 |
57DAP/reference | 0.88585 | 0.069 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94977 | 1 |
26DAP/20DAP | 0.87896 | 0.512 |
34DAP/26DAP | 1.00219 | 1 |
51DAP/34DAP | 0.99575 | 0.937 |
52DAP/51DAP | 1.08591 | 0.387 |
53DAP/52DAP | 1.07813 | 0.678 |
55DAP/53DAP | 1.13297 | 0.429 |
57DAP/55DAP | 1.00123 | 0.968 |
62DAP/57DAP | 1.09935 | 0.158 |
68DAP/62DAP | 0.89194 | 0.429 |
68DAP/14DAP | 0.95423 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02318 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.78437 | 0.286 |
Mature Green Tomato/Ripe Tomato | 0.88443 | 0.256 |
Immature Eggplant/Mature Eggplant | 1.72219 | 0.053 |
Ripe Pepper/Ripe Tomato | 1.18224 | 1 |
Mature Eggplant/Ripe Tomato | 1.17463 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.89366 | 0.907 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 1.04074 | 1 |
12-4/M82 | 0.97808 | 1 |
1-3/M82 | 0.92877 | 1 |
2-1-1/M82 | 1.13876 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.05132 | 0.695 |
3-2/M82 | 1.03561 | 0.967 |
4-1-1/M82 | 1.04351 | 1 |
4-1/M82 | 0.86805 | 1 |
4-3-2/M82 | 0.99004 | 1 |
4-3/M82 | 0.80982 | |
5-3/M82 | 0.99538 | 1 |
6-2/M82 | 0.87541 | |
6-3/M82 | 1.05308 | 1 |
7-1/M82 | 0.91829 | |
7-2/M82 | 1.04427 | 1 |
9-3-2/M82 | 0.91297 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.77096 | 0.243 |
IL2-6/WTpooled | 1.36487 | 0.659 |
IL7-5/WTpooled | 1.36188 | 1 |
IL7-3/WTpooled | 0.9076 | 1 |
IL12-4/WTpooled | 1.11337 | 0.839 |
IL1-4/WTpooled | 1.0448 | 1 |
WT/WTpooled | 1.00673 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.18612 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03968 | 0.921 |
DC3000/delta hrp 6h | 1.77409 | |
DC3000/delta hrp 12h | 1.05767 | 1 |
DC3000/delta hrp 24h | 1.09654 | 0.502 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09432 | 0.408 |
DC3000 delta B/DC3000 delta AB | 1.0327 | 0.738 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.60492 | 0.205 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96884 | |
Var 0h | 0.70655 | 1 |
Var 12h I row2-row1 | 1.23759 | 0.254 |
Var 12h NI row2-row1 | 0.90589 | 0.713 |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 0.96027 | 0.791 |
Var 60h I row2-row1 | 0.90243 | 0.439 |
Var 60h NI row2-row1 | 1.21264 | 0.904 |
Time course 0hI-0hNI | 1.05797 | 0.799 |
Time course 12hI-12hNI | 1.10953 | 0.507 |
Time course 36hI-36hNI | 1.68726 | 0.248 |
Time course 60hI-60hNI | 2.2197 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.23751 | 0.228 |
transgenic ySAMdc/azygous control (breaker) | 0.95948 | 1 |
transgenic ySAMdc/azygous control (red) | 1.0867 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99329 | 0.588 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99556 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02557 | 1 |
Manapal/WT (break) | 0.81616 | 0.333 |
Manapal/WT (red) | 0.88702 | 0.503 |
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