Expression of 1-1-2.1.19.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.334340.153
27DAP/17DAP1.073961
39DAP/27DAP1.270050.702
41DAP/39DAP1.195420.708
42DAP/41DAP1.082620.938
43DAP/42DAP1.331310.829
47DAP/43DAP0.947050.671
52DAP/47DAP1.029850.989
57DAP/52DAP1.110981

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.897170.172
17DAP/reference1.043570.585
27DAP/reference1.067940.599
39DAP/reference1.009981
41DAP/reference1.022451
42DAP/reference0.904390.026
43DAP/reference0.893260.143
47DAP/reference0.931780.174
52DAP/reference0.935640.283
57DAP/reference1.078420.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.351820.048
27DAP/17DAP1.455590.514
39DAP/27DAP0.91530.607
41DAP/39DAP1.636950.727
42DAP/41DAP0.830940.305
43DAP/42DAP1.128280.699
47DAP/43DAP0.916880.734
52DAP/47DAP0.946870.886
57DAP/52DAP1.462090.374
57DAP/7DAP1.25975

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.927680.122
17DAP/reference0.886840.013
27DAP/reference0.879050.014
39DAP/reference0.883980.018
41DAP/reference0.890520.052
42DAP/reference0.900410.035
43DAP/reference0.854160.028
47DAP/reference0.901670.383
52DAP/reference0.938670.137
57DAP/reference0.979950.396

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.938050.487
17DAP/reference0.864620.153
27DAP/reference0.808030.115
39DAP/reference0.845030.105
41DAP/reference0.912550.152
42DAP/reference0.828810.037
43DAP/reference1.007580.787
47DAP/reference0.844680.025
52DAP/reference1.051490.528
57DAP/reference1.040621

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.823720.034
17DAP/reference0.946740.407
27DAP/reference0.775950.027
39DAP/reference0.815140.008
41DAP/reference0.911020.028
42DAP/reference0.840530.017
43DAP/reference0.746290.024
47DAP/reference0.909370.24
52DAP/reference0.777780.066
57DAP/reference0.897830.258

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.276940.966
26DAP/20DAP3.94046
34DAP/26DAP1.135761
51DAP/34DAP0.74640.107
52DAP/51DAP1.082221
53DAP/52DAP1.048960.868
55DAP/53DAP0.89670.445
57DAP/55DAP1.256190.826
62DAP/57DAP6.855680.8
68DAP/62DAP0.941340.769
68DAP/14DAP0.864381

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.030750.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato14.3174
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.812680.708
1-1-2/M820.83114
12-2/M820.84728
12-4/M821.23339
1-3/M820.6270.376
2-1-1/M821.16048
2-1/M82N/AN/A
2-6/M821.223150.594
3-2/M821.05094
4-1-1/M821.14568
4-1/M821.15361
4-3-2/M82N/AN/A
4-3/M820.70092
5-3/M820.87191
6-2/M821.061351
6-3/M821.320351
7-1/M821.1485
7-2/M820.79897
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.050710.921
DC3000/delta hrp 6h6.56688
DC3000/delta hrp 12h1.687681
DC3000/delta hrp 24h1.178550.254

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNI1.37853
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)1.36830.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.009550.811

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.742310.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.782451
Manapal/WT (red)0.721130.274