Expression of 1-1-2.1.19.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.33434 | 0.153 |
27DAP/17DAP | 1.07396 | 1 |
39DAP/27DAP | 1.27005 | 0.702 |
41DAP/39DAP | 1.19542 | 0.708 |
42DAP/41DAP | 1.08262 | 0.938 |
43DAP/42DAP | 1.33131 | 0.829 |
47DAP/43DAP | 0.94705 | 0.671 |
52DAP/47DAP | 1.02985 | 0.989 |
57DAP/52DAP | 1.11098 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89717 | 0.172 |
17DAP/reference | 1.04357 | 0.585 |
27DAP/reference | 1.06794 | 0.599 |
39DAP/reference | 1.00998 | 1 |
41DAP/reference | 1.02245 | 1 |
42DAP/reference | 0.90439 | 0.026 |
43DAP/reference | 0.89326 | 0.143 |
47DAP/reference | 0.93178 | 0.174 |
52DAP/reference | 0.93564 | 0.283 |
57DAP/reference | 1.07842 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.35182 | 0.048 |
27DAP/17DAP | 1.45559 | 0.514 |
39DAP/27DAP | 0.9153 | 0.607 |
41DAP/39DAP | 1.63695 | 0.727 |
42DAP/41DAP | 0.83094 | 0.305 |
43DAP/42DAP | 1.12828 | 0.699 |
47DAP/43DAP | 0.91688 | 0.734 |
52DAP/47DAP | 0.94687 | 0.886 |
57DAP/52DAP | 1.46209 | 0.374 |
57DAP/7DAP | 1.25975 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92768 | 0.122 |
17DAP/reference | 0.88684 | 0.013 |
27DAP/reference | 0.87905 | 0.014 |
39DAP/reference | 0.88398 | 0.018 |
41DAP/reference | 0.89052 | 0.052 |
42DAP/reference | 0.90041 | 0.035 |
43DAP/reference | 0.85416 | 0.028 |
47DAP/reference | 0.90167 | 0.383 |
52DAP/reference | 0.93867 | 0.137 |
57DAP/reference | 0.97995 | 0.396 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93805 | 0.487 |
17DAP/reference | 0.86462 | 0.153 |
27DAP/reference | 0.80803 | 0.115 |
39DAP/reference | 0.84503 | 0.105 |
41DAP/reference | 0.91255 | 0.152 |
42DAP/reference | 0.82881 | 0.037 |
43DAP/reference | 1.00758 | 0.787 |
47DAP/reference | 0.84468 | 0.025 |
52DAP/reference | 1.05149 | 0.528 |
57DAP/reference | 1.04062 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82372 | 0.034 |
17DAP/reference | 0.94674 | 0.407 |
27DAP/reference | 0.77595 | 0.027 |
39DAP/reference | 0.81514 | 0.008 |
41DAP/reference | 0.91102 | 0.028 |
42DAP/reference | 0.84053 | 0.017 |
43DAP/reference | 0.74629 | 0.024 |
47DAP/reference | 0.90937 | 0.24 |
52DAP/reference | 0.77778 | 0.066 |
57DAP/reference | 0.89783 | 0.258 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.27694 | 0.966 |
26DAP/20DAP | 3.94046 | |
34DAP/26DAP | 1.13576 | 1 |
51DAP/34DAP | 0.7464 | 0.107 |
52DAP/51DAP | 1.08222 | 1 |
53DAP/52DAP | 1.04896 | 0.868 |
55DAP/53DAP | 0.8967 | 0.445 |
57DAP/55DAP | 1.25619 | 0.826 |
62DAP/57DAP | 6.85568 | 0.8 |
68DAP/62DAP | 0.94134 | 0.769 |
68DAP/14DAP | 0.86438 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03075 | 0.774 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 14.3174 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.81268 | 0.708 |
1-1-2/M82 | 0.83114 | |
12-2/M82 | 0.84728 | |
12-4/M82 | 1.23339 | |
1-3/M82 | 0.627 | 0.376 |
2-1-1/M82 | 1.16048 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.22315 | 0.594 |
3-2/M82 | 1.05094 | |
4-1-1/M82 | 1.14568 | |
4-1/M82 | 1.15361 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.70092 | |
5-3/M82 | 0.8719 | 1 |
6-2/M82 | 1.06135 | 1 |
6-3/M82 | 1.32035 | 1 |
7-1/M82 | 1.1485 | |
7-2/M82 | 0.79897 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05071 | 0.921 |
DC3000/delta hrp 6h | 6.56688 | |
DC3000/delta hrp 12h | 1.68768 | 1 |
DC3000/delta hrp 24h | 1.17855 | 0.254 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | 1.37853 | |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 1.3683 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00955 | 0.811 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.74231 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.78245 | 1 |
Manapal/WT (red) | 0.72113 | 0.274 |
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