Expression of 1-1-2.1.19.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96907 | 0.77 |
27DAP/17DAP | 1.08212 | 0.926 |
39DAP/27DAP | 1.16318 | 0.882 |
41DAP/39DAP | 1.22052 | 0.225 |
42DAP/41DAP | 1.03702 | 1 |
43DAP/42DAP | 1.2607 | 0.933 |
47DAP/43DAP | 1.05987 | 0.856 |
52DAP/47DAP | 1.04181 | 0.945 |
57DAP/52DAP | 0.89914 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02366 | 0.994 |
17DAP/reference | 0.92125 | 0.24 |
27DAP/reference | 0.97171 | 0.623 |
39DAP/reference | 0.89154 | 0.09 |
41DAP/reference | 0.96225 | 0.667 |
42DAP/reference | 1.21676 | 0.016 |
43DAP/reference | 0.90979 | 0.302 |
47DAP/reference | 0.91642 | 0.021 |
52DAP/reference | 1.07592 | 0.633 |
57DAP/reference | 0.91127 | 0.221 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99426 | 0.697 |
27DAP/17DAP | 1.29467 | 0.367 |
39DAP/27DAP | 0.93536 | 0.514 |
41DAP/39DAP | 1.12262 | 0.883 |
42DAP/41DAP | 0.84756 | 0.216 |
43DAP/42DAP | 0.96259 | 0.729 |
47DAP/43DAP | 1.06292 | 0.713 |
52DAP/47DAP | 1.02255 | 0.939 |
57DAP/52DAP | 1.39824 | 0.117 |
57DAP/7DAP | 1.41577 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89892 | 0.246 |
17DAP/reference | 0.79233 | 0.015 |
27DAP/reference | 0.83784 | 0.024 |
39DAP/reference | 0.83744 | 0.064 |
41DAP/reference | 0.84247 | 0.073 |
42DAP/reference | 0.89199 | 0.2 |
43DAP/reference | 1.01117 | 0.637 |
47DAP/reference | 0.97168 | 0.504 |
52DAP/reference | 0.92549 | 0.232 |
57DAP/reference | 0.8462 | 0.086 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05654 | 0.577 |
17DAP/reference | 0.94921 | 0.326 |
27DAP/reference | 0.95941 | 0.438 |
39DAP/reference | 0.85891 | 0.038 |
41DAP/reference | 1.12209 | 0.737 |
42DAP/reference | 1.06118 | 0.555 |
43DAP/reference | 1.14597 | 0.396 |
47DAP/reference | 1.1068 | 0.092 |
52DAP/reference | 0.95567 | 0.327 |
57DAP/reference | 0.99581 | 0.754 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79448 | 0.041 |
17DAP/reference | 0.80865 | 0.249 |
27DAP/reference | 0.86428 | 0.065 |
39DAP/reference | 0.83665 | 0.111 |
41DAP/reference | 0.93094 | 0.293 |
42DAP/reference | 0.80602 | 0.025 |
43DAP/reference | 0.76392 | 0.03 |
47DAP/reference | 0.93269 | 0.231 |
52DAP/reference | 0.81069 | 0.18 |
57DAP/reference | 0.99896 | 0.79 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.19494 | 0.966 |
26DAP/20DAP | 0.77103 | 0.512 |
34DAP/26DAP | 1.40403 | 0.819 |
51DAP/34DAP | 1.04995 | 0.869 |
52DAP/51DAP | 0.79704 | 1 |
53DAP/52DAP | 1.37399 | 0.678 |
55DAP/53DAP | 0.90399 | 0.53 |
57DAP/55DAP | 0.78647 | 0.202 |
62DAP/57DAP | 2.20908 | 0.678 |
68DAP/62DAP | 1.30848 | 0.907 |
68DAP/14DAP | 1.21391 | 0.099 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.12811 | 0.782 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.40747 | 0.129 |
Mature Green Tomato/Ripe Tomato | 0.68915 | 0.038 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.59364 | |
Mature Eggplant/Ripe Tomato | 0.27746 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 5.20387 | |
1-1-2/M82 | 1.16464 | 1 |
12-2/M82 | 1.76047 | 1 |
12-4/M82 | 3.99852 | 0.611 |
1-3/M82 | 1.72914 | 1 |
2-1-1/M82 | 3.52799 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.25475 | 0.501 |
3-2/M82 | 2.94512 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.64486 | |
4-3-2/M82 | 0.98809 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.16375 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 2.97955 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.93951 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.21041 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.36123 | 1 |
DC3000/delta hrp 24h | 1.96921 | 0.502 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.7726 | 0.291 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 0.64792 | |
Time course 0hI-0hNI | 0.97807 | 0.994 |
Time course 12hI-12hNI | 1.01311 | |
Time course 36hI-36hNI | 0.85058 | |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 13.915 | 0.287 |
transgenic ySAMdc/azygous control (breaker) | 1.06375 | 1 |
transgenic ySAMdc/azygous control (red) | 0.9317 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03324 | 0.155 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.98616 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.27457 | 1 |
Manapal/WT (red) | N/A | N/A |
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