Expression of 1-1-2.1.2.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.754820.103
27DAP/17DAP0.711410.238
39DAP/27DAP1.091010.857
41DAP/39DAP0.821730.33
42DAP/41DAP1.010791
43DAP/42DAP1.404020.348
47DAP/43DAP0.612040.084
52DAP/47DAP1.058440.908
57DAP/52DAP1.050380.976

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.988820.645
17DAP/reference1.136720.318
27DAP/reference1.245880.066
39DAP/reference1.058470.534
41DAP/reference1.092080.759
42DAP/reference1.881470.001
43DAP/reference1.184250.163
47DAP/reference1.234220.862
52DAP/reference1.084660.663
57DAP/reference0.997770.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.908220.496
27DAP/17DAP1.006290.969
39DAP/27DAP0.792010.039
41DAP/39DAP0.948610.923
42DAP/41DAP0.910880.481
43DAP/42DAP0.923910.482
47DAP/43DAP0.891690.357
52DAP/47DAP0.951780.868
57DAP/52DAP1.267750.618
57DAP/7DAP0.643361

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.090950.385
17DAP/reference1.183120.18
27DAP/reference1.137340.551
39DAP/reference1.300320.157
41DAP/reference1.128810.251
42DAP/reference1.158620.534
43DAP/reference1.335920.167
47DAP/reference1.556790.045
52DAP/reference1.419740.015
57DAP/reference1.071080.571

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.883250.182
17DAP/reference1.050930.584
27DAP/reference1.359050.06
39DAP/reference1.645490.013
41DAP/reference1.250770.06
42DAP/reference1.331540.148
43DAP/reference1.240730.226
47DAP/reference1.107440.148
52DAP/reference1.06560.747
57DAP/reference1.074180.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.996340.699
17DAP/reference0.889410.243
27DAP/reference1.140130.062
39DAP/reference1.238040.218
41DAP/reference1.161860.257
42DAP/reference1.057091
43DAP/reference1.125930.572
47DAP/reference1.35170.008
52DAP/reference1.161220.499
57DAP/reference1.101380.428

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.046331
26DAP/20DAP1.04760.826
34DAP/26DAP1.068861
51DAP/34DAP1.126330.677
52DAP/51DAP0.936821
53DAP/52DAP1.098790.845
55DAP/53DAP1.146410.798
57DAP/55DAP0.625850.058
62DAP/57DAP1.020231
68DAP/62DAP0.945150.787
68DAP/14DAP1.231930.676

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.694050.024

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.844230.309
Mature Green Tomato/Ripe Tomato3.429810.015
Immature Eggplant/Mature Eggplant1.326020.101
Ripe Pepper/Ripe Tomato8.342621
Mature Eggplant/Ripe Tomato7.82771

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.033441
1-1-2/M821.345451
12-2/M820.722130.639
12-4/M820.995931
1-3/M821.133560.277
2-1-1/M820.90669
2-1/M82N/AN/A
2-6/M821.385680.425
3-2/M820.88855
4-1-1/M820.7925
4-1/M821.00183
4-3-2/M820.91656
4-3/M821.04142
5-3/M820.832250.642
6-2/M821.18856
6-3/M821.17452
7-1/M820.961
7-2/M821.012541
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.325870.277
IL2-6/WTpooled0.817751
IL7-5/WTpooled0.942631
IL7-3/WTpooled1.200421
IL12-4/WTpooled1.716070.505
IL1-4/WTpooled1.118441
WT/WTpooled0.978181

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.905140.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.006040.921
DC3000/delta hrp 6h1.003190.95
DC3000/delta hrp 12h1.464641
DC3000/delta hrp 24h0.439520.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.745790.081
DC3000 delta B/DC3000 delta AB0.893250.1

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.945571
Exp 36h0.939110.749
Exp 60h1.08070.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.037451
Var 0h1.435020.936
Var 12h I row2-row10.803740.418
Var 12h NI row2-row10.800850.627
Var 36h I row2-row10.949180.805
Var 36h NI row2-row11.285480.482
Var 60h I row2-row11.091950.562
Var 60h NI row2-row11.105660.904
Time course 0hI-0hNI0.868760.185
Time course 12hI-12hNI0.811420.224
Time course 36hI-36hNI0.774840.023
Time course 60hI-60hNI0.121880.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.126020.571
transgenic ySAMdc/azygous control (breaker)0.794870.15
transgenic ySAMdc/azygous control (red)1.11440.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.268110.05

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.544720.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.928441
Manapal/WT (break)0.976781
Manapal/WT (red)1.750780.413