Expression of 1-1-2.1.2.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.60137 | 0.034 |
27DAP/17DAP | 0.51633 | 0.035 |
39DAP/27DAP | 0.61642 | 0.298 |
41DAP/39DAP | 0.95656 | 0.807 |
42DAP/41DAP | 1.0873 | 0.933 |
43DAP/42DAP | 1.34274 | 0.181 |
47DAP/43DAP | 1.05019 | 0.943 |
52DAP/47DAP | 0.54182 | 0.048 |
57DAP/52DAP | 1.03139 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.57833 | 0.009 |
17DAP/reference | 0.98534 | 0.701 |
27DAP/reference | 0.88706 | 0.182 |
39DAP/reference | 0.84929 | 0.136 |
41DAP/reference | 0.70528 | 0.018 |
42DAP/reference | 0.95065 | 0.163 |
43DAP/reference | 0.96609 | 0.576 |
47DAP/reference | 0.85234 | 0.012 |
52DAP/reference | 0.72241 | 0.051 |
57DAP/reference | 1.05907 | 0.392 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.68724 | 0.036 |
27DAP/17DAP | 0.89775 | 0.418 |
39DAP/27DAP | 0.46525 | 0.029 |
41DAP/39DAP | 0.85066 | 0.154 |
42DAP/41DAP | 1.11293 | 0.12 |
43DAP/42DAP | 1.01491 | 0.788 |
47DAP/43DAP | 0.92357 | 0.647 |
52DAP/47DAP | 0.93193 | 0.746 |
57DAP/52DAP | 1.02344 | 0.905 |
57DAP/7DAP | 0.16249 | 0.143 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.32741 | 0.024 |
17DAP/reference | 1.30371 | 0.025 |
27DAP/reference | 0.95394 | 0.303 |
39DAP/reference | 1.34258 | 0.027 |
41DAP/reference | 1.07765 | 0.56 |
42DAP/reference | 1.20365 | 0.076 |
43DAP/reference | 1.14856 | 0.273 |
47DAP/reference | 0.76017 | 0.057 |
52DAP/reference | 0.9575 | 0.398 |
57DAP/reference | 1.26514 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.55062 | 0.038 |
17DAP/reference | 1.0425 | 0.961 |
27DAP/reference | 0.90785 | 0.212 |
39DAP/reference | 0.72006 | 0.012 |
41DAP/reference | 0.78001 | 0.042 |
42DAP/reference | 0.6459 | 0.016 |
43DAP/reference | 0.6441 | 0.002 |
47DAP/reference | 0.67593 | 0.01 |
52DAP/reference | 0.73179 | 0.005 |
57DAP/reference | 0.61953 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 3.44078 | 0.015 |
17DAP/reference | 1.95959 | 0.037 |
27DAP/reference | 1.40945 | 0.026 |
39DAP/reference | 1.29836 | 0.053 |
41DAP/reference | 1.15009 | 0.425 |
42DAP/reference | 1.30319 | 0.313 |
43DAP/reference | 1.61482 | 0.019 |
47DAP/reference | 1.72928 | 0.005 |
52DAP/reference | 1.65471 | 0.071 |
57DAP/reference | 1.21376 | 0.175 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94582 | 1 |
26DAP/20DAP | 0.87871 | 1 |
34DAP/26DAP | 1.07234 | 1 |
51DAP/34DAP | 1.43262 | 0.075 |
52DAP/51DAP | 0.77893 | 0.151 |
53DAP/52DAP | 0.76928 | 0.124 |
55DAP/53DAP | 0.75518 | 0.303 |
57DAP/55DAP | 0.81763 | 0.337 |
62DAP/57DAP | 0.82321 | 0.28 |
68DAP/62DAP | 0.8108 | 0.609 |
68DAP/14DAP | 0.91813 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.65843 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.83193 | 0.286 |
Mature Green Tomato/Ripe Tomato | 4.62125 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.43432 | 0.058 |
Ripe Pepper/Ripe Tomato | 5.5248 | 0.256 |
Mature Eggplant/Ripe Tomato | 4.08289 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.55132 | 1 |
12-2/M82 | 0.89229 | 0.955 |
12-4/M82 | 0.45791 | 0.298 |
1-3/M82 | 0.87919 | |
2-1-1/M82 | 0.15318 | |
2-1/M82 | 0.26328 | 0.322 |
2-6/M82 | 10.3817 | |
3-2/M82 | 0.54542 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.20267 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.57978 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.38087 | 0.452 |
7-2/M82 | 2.2848 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.79758 | 0.243 |
IL2-6/WTpooled | 0.90826 | 0.473 |
IL7-5/WTpooled | 0.72337 | 1 |
IL7-3/WTpooled | 1.28824 | 0.362 |
IL12-4/WTpooled | 1.08232 | 0.531 |
IL1-4/WTpooled | 0.92744 | 0.562 |
WT/WTpooled | 0.95885 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04948 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96566 | 1 |
DC3000/delta hrp 6h | 0.98815 | 0.95 |
DC3000/delta hrp 12h | 0.92282 | 1 |
DC3000/delta hrp 24h | 0.8236 | 0.464 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.40702 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.35279 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9808 | 1 |
Exp 36h | 0.7616 | 0.589 |
Exp 60h | 0.62511 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96743 | 1 |
Var 0h | 0.43937 | 0.332 |
Var 12h I row2-row1 | 0.64212 | 0.363 |
Var 12h NI row2-row1 | 1.11319 | 1 |
Var 36h I row2-row1 | 0.93827 | 0.805 |
Var 36h NI row2-row1 | 1.03438 | 1 |
Var 60h I row2-row1 | 1.26569 | 0.523 |
Var 60h NI row2-row1 | 0.92932 | 1 |
Time course 0hI-0hNI | 0.96326 | 0.801 |
Time course 12hI-12hNI | 0.99908 | 1 |
Time course 36hI-36hNI | 0.85562 | 0.03 |
Time course 60hI-60hNI | 0.11922 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94451 | 0.33 |
transgenic ySAMdc/azygous control (breaker) | 1.25977 | 1 |
transgenic ySAMdc/azygous control (red) | 4.70965 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.82888 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.27594 | 0.223 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.78591 | 0.087 |
Manapal/WT (break) | 9.3512 | 0.14 |
Manapal/WT (red) | 3.676 | 0.15 |
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