Expression of 1-1-2.1.2.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.601370.034
27DAP/17DAP0.516330.035
39DAP/27DAP0.616420.298
41DAP/39DAP0.956560.807
42DAP/41DAP1.08730.933
43DAP/42DAP1.342740.181
47DAP/43DAP1.050190.943
52DAP/47DAP0.541820.048
57DAP/52DAP1.031390.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.578330.009
17DAP/reference0.985340.701
27DAP/reference0.887060.182
39DAP/reference0.849290.136
41DAP/reference0.705280.018
42DAP/reference0.950650.163
43DAP/reference0.966090.576
47DAP/reference0.852340.012
52DAP/reference0.722410.051
57DAP/reference1.059070.392

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.687240.036
27DAP/17DAP0.897750.418
39DAP/27DAP0.465250.029
41DAP/39DAP0.850660.154
42DAP/41DAP1.112930.12
43DAP/42DAP1.014910.788
47DAP/43DAP0.923570.647
52DAP/47DAP0.931930.746
57DAP/52DAP1.023440.905
57DAP/7DAP0.162490.143

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.327410.024
17DAP/reference1.303710.025
27DAP/reference0.953940.303
39DAP/reference1.342580.027
41DAP/reference1.077650.56
42DAP/reference1.203650.076
43DAP/reference1.148560.273
47DAP/reference0.760170.057
52DAP/reference0.95750.398
57DAP/reference1.265140.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.550620.038
17DAP/reference1.04250.961
27DAP/reference0.907850.212
39DAP/reference0.720060.012
41DAP/reference0.780010.042
42DAP/reference0.64590.016
43DAP/reference0.64410.002
47DAP/reference0.675930.01
52DAP/reference0.731790.005
57DAP/reference0.619530.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.440780.015
17DAP/reference1.959590.037
27DAP/reference1.409450.026
39DAP/reference1.298360.053
41DAP/reference1.150090.425
42DAP/reference1.303190.313
43DAP/reference1.614820.019
47DAP/reference1.729280.005
52DAP/reference1.654710.071
57DAP/reference1.213760.175

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.945821
26DAP/20DAP0.878711
34DAP/26DAP1.072341
51DAP/34DAP1.432620.075
52DAP/51DAP0.778930.151
53DAP/52DAP0.769280.124
55DAP/53DAP0.755180.303
57DAP/55DAP0.817630.337
62DAP/57DAP0.823210.28
68DAP/62DAP0.81080.609
68DAP/14DAP0.918131

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.658430.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.831930.286
Mature Green Tomato/Ripe Tomato4.621250.015
Immature Eggplant/Mature Eggplant0.434320.058
Ripe Pepper/Ripe Tomato5.52480.256
Mature Eggplant/Ripe Tomato4.082890.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.551321
12-2/M820.892290.955
12-4/M820.457910.298
1-3/M820.87919
2-1-1/M820.15318
2-1/M820.263280.322
2-6/M8210.3817
3-2/M820.54542
4-1-1/M82N/AN/A
4-1/M820.20267
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.579781
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.380870.452
7-2/M822.2848
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.797580.243
IL2-6/WTpooled0.908260.473
IL7-5/WTpooled0.723371
IL7-3/WTpooled1.288240.362
IL12-4/WTpooled1.082320.531
IL1-4/WTpooled0.927440.562
WT/WTpooled0.958851

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.049481

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.965661
DC3000/delta hrp 6h0.988150.95
DC3000/delta hrp 12h0.922821
DC3000/delta hrp 24h0.82360.464

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.407020.024
DC3000 delta B/DC3000 delta AB0.352790.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.98081
Exp 36h0.76160.589
Exp 60h0.625110.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.967431
Var 0h0.439370.332
Var 12h I row2-row10.642120.363
Var 12h NI row2-row11.113191
Var 36h I row2-row10.938270.805
Var 36h NI row2-row11.034381
Var 60h I row2-row11.265690.523
Var 60h NI row2-row10.929321
Time course 0hI-0hNI0.963260.801
Time course 12hI-12hNI0.999081
Time course 36hI-36hNI0.855620.03
Time course 60hI-60hNI0.119220.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.944510.33
transgenic ySAMdc/azygous control (breaker)1.259771
transgenic ySAMdc/azygous control (red)4.709650.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.828880.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.275940.223

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.785910.087
Manapal/WT (break)9.35120.14
Manapal/WT (red)3.6760.15