Tomato Functional Genomics Database (TFGD)

Expression of 1-1-2.1.20.10

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.26347	0.681
27DAP/17DAP	1.23704	0.841
39DAP/27DAP	0.69717	0.421
41DAP/39DAP	1.31818	0.437
42DAP/41DAP	1.1869	0.931
43DAP/42DAP	1.19753	0.933
47DAP/43DAP	1.11727	0.909
52DAP/47DAP	1.07734	0.964
57DAP/52DAP	0.94107	0.926

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.80672	0.053
17DAP/reference	0.97757	0.63
27DAP/reference	1.00972	0.923
39DAP/reference	0.87832	0.064
41DAP/reference	0.82423	0.154
42DAP/reference	0.92302	0.085
43DAP/reference	0.94836	0.464
47DAP/reference	0.92802	0.224
52DAP/reference	0.93142	0.33
57DAP/reference	1.09705	0.744

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.30276	1
27DAP/17DAP	1.19078	0.482
39DAP/27DAP	0.93631	0.747
41DAP/39DAP	1.20169	0.807
42DAP/41DAP	1.22953	0.571
43DAP/42DAP	3.29112	0.413
47DAP/43DAP	1.66495	0.147
52DAP/47DAP	0.98205	0.925
57DAP/52DAP	1.47705	0.095
57DAP/7DAP	1.4248	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.91089	0.071
17DAP/reference	0.86559	0.011
27DAP/reference	0.89826	0.01
39DAP/reference	0.99224	0.411
41DAP/reference	0.97323	0.489
42DAP/reference	0.9677	0.355
43DAP/reference	0.91067	0.029
47DAP/reference	0.85072	0.168
52DAP/reference	0.92495	0.021
57DAP/reference	0.96701	0.353

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.82307	0.072
17DAP/reference	0.86518	0.116
27DAP/reference	0.81086	0.074
39DAP/reference	0.89552	0.159
41DAP/reference	0.84765	0.156
42DAP/reference	0.76128	0.016
43DAP/reference	0.81386	0.077
47DAP/reference	0.80937	0.094
52DAP/reference	0.89247	0.22
57DAP/reference	0.80776	0.026

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.88843	0.032
17DAP/reference	0.8407	0.109
27DAP/reference	0.9261	0.033
39DAP/reference	0.91739	0.063
41DAP/reference	0.89017	0.019
42DAP/reference	0.86749	0.025
43DAP/reference	0.90338	0.061
47DAP/reference	0.82324	0.009
52DAP/reference	0.89981	0.211
57DAP/reference	0.87225	0.06

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.32752	0.966
26DAP/20DAP	0.48364
34DAP/26DAP	0.91366	0.816
51DAP/34DAP	1.35729	0.814
52DAP/51DAP	1.15671	0.939
53DAP/52DAP	1.23124	0.783
55DAP/53DAP	1.06609	0.771
57DAP/55DAP	1.74903
62DAP/57DAP	0.91768	0.994
68DAP/62DAP	1.47844	0.151
68DAP/14DAP	1.5174	0.029

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.2582	0.954

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.7987	0.226
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	0.92359
12-2/M82	N/A	N/A
12-4/M82	0.56795
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	0.88396
4-3-2/M82	1.01041
4-3/M82	N/A	N/A
5-3/M82	1.30061	1
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	0.6376

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.55723	0.243
IL2-6/WTpooled	1.34577	0.456
IL7-5/WTpooled	1.24241	0.792
IL7-3/WTpooled	0.55057	0.294
IL12-4/WTpooled	0.78285	0.71
IL1-4/WTpooled	0.96936	0.834
WT/WTpooled	0.97675	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.01684	1
DC3000/delta hrp 6h	6.50533
DC3000/delta hrp 12h	0.76003	1
DC3000/delta hrp 24h	1.14794	0.453

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.48099	1
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	1.34383	1
transgenic ySAMdc/azygous control (red)	1.48712	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.98529	0.588

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.13861	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.25683	0.083
Manapal/WT (break)	1.33344	0.183
Manapal/WT (red)	0.628	0.274