Expression of 1-1-2.1.20.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.817290.087
27DAP/17DAP1.010571
39DAP/27DAP0.96480.749
41DAP/39DAP0.773330.358
42DAP/41DAP0.798870.774
43DAP/42DAP1.05291
47DAP/43DAP1.257230.216
52DAP/47DAP1.023060.842
57DAP/52DAP0.922140.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.175070.089
17DAP/reference1.170040.051
27DAP/reference1.149350.258
39DAP/reference1.310170.524
41DAP/reference1.19460.145
42DAP/reference1.14270.449
43DAP/reference0.859030.273
47DAP/reference1.156880.001
52DAP/reference0.858470.167
57DAP/reference0.5891

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.018080.923
27DAP/17DAP1.232730.55
39DAP/27DAP0.856250.412
41DAP/39DAP1.175330.682
42DAP/41DAP1.019720.894
43DAP/42DAP1.190650.192
47DAP/43DAP0.96870.877
52DAP/47DAP0.964470.899
57DAP/52DAP0.706770.185
57DAP/7DAP1.142871

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.895020.104
17DAP/reference0.829960.044
27DAP/reference0.733070.01
39DAP/reference0.716420.018
41DAP/reference0.659740.013
42DAP/reference0.726620.011
43DAP/reference0.712240.014
47DAP/reference0.810530.079
52DAP/reference0.795850.077
57DAP/reference0.708560.013

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.099460.226
17DAP/reference0.95750.201
27DAP/reference0.807380.074
39DAP/reference1.109140.239
41DAP/reference0.932830.262
42DAP/reference0.670190.011
43DAP/reference1.063130.835
47DAP/reference0.851190.029
52DAP/reference0.964230.351
57DAP/reference1.084270.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.846880.05
17DAP/reference0.898530.313
27DAP/reference0.781110.035
39DAP/reference0.780150.018
41DAP/reference0.883350.209
42DAP/reference0.732490.015
43DAP/reference0.735550.033
47DAP/reference0.87160.207
52DAP/reference0.824320.189
57DAP/reference0.589460.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.003361
26DAP/20DAP1.195970.778
34DAP/26DAP1.259620.542
51DAP/34DAP1.074270.844
52DAP/51DAP1.464760.387
53DAP/52DAP1.141740.723
55DAP/53DAP1.185510.103
57DAP/55DAP0.815290.37
62DAP/57DAP1.181330.902
68DAP/62DAP0.960980.81
68DAP/14DAP1.016831

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.761350.129

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.245220.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.83337
Mature Eggplant/Ripe Tomato8.79549

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.02262
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.240430.277
IL2-6/WTpooled0.353760.473
IL7-5/WTpooled0.550931
IL7-3/WTpooled0.945631
IL12-4/WTpooled0.900490.71
IL1-4/WTpooled0.591960.457
WT/WTpooled1.144490.686

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.436781

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.089820.921
DC3000/delta hrp 6h1.555431
DC3000/delta hrp 12h1.039121
DC3000/delta hrp 24h1.07010.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB4.48014
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.076551
Exp 36h2.056361
Exp 60h0.522030.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row11.72304
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI0.95307
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNI1.49726
Time course 60hI-60hNI2.86278

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.49520.268
transgenic ySAMdc/azygous control (breaker)0.973221
transgenic ySAMdc/azygous control (red)1.257390.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.965060.277

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.040931
Manapal/WT (break)0.75531
Manapal/WT (red)0.814120.242