Expression of 1-1-2.1.20.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81729 | 0.087 |
27DAP/17DAP | 1.01057 | 1 |
39DAP/27DAP | 0.9648 | 0.749 |
41DAP/39DAP | 0.77333 | 0.358 |
42DAP/41DAP | 0.79887 | 0.774 |
43DAP/42DAP | 1.0529 | 1 |
47DAP/43DAP | 1.25723 | 0.216 |
52DAP/47DAP | 1.02306 | 0.842 |
57DAP/52DAP | 0.92214 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17507 | 0.089 |
17DAP/reference | 1.17004 | 0.051 |
27DAP/reference | 1.14935 | 0.258 |
39DAP/reference | 1.31017 | 0.524 |
41DAP/reference | 1.1946 | 0.145 |
42DAP/reference | 1.1427 | 0.449 |
43DAP/reference | 0.85903 | 0.273 |
47DAP/reference | 1.15688 | 0.001 |
52DAP/reference | 0.85847 | 0.167 |
57DAP/reference | 0.5891 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01808 | 0.923 |
27DAP/17DAP | 1.23273 | 0.55 |
39DAP/27DAP | 0.85625 | 0.412 |
41DAP/39DAP | 1.17533 | 0.682 |
42DAP/41DAP | 1.01972 | 0.894 |
43DAP/42DAP | 1.19065 | 0.192 |
47DAP/43DAP | 0.9687 | 0.877 |
52DAP/47DAP | 0.96447 | 0.899 |
57DAP/52DAP | 0.70677 | 0.185 |
57DAP/7DAP | 1.14287 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89502 | 0.104 |
17DAP/reference | 0.82996 | 0.044 |
27DAP/reference | 0.73307 | 0.01 |
39DAP/reference | 0.71642 | 0.018 |
41DAP/reference | 0.65974 | 0.013 |
42DAP/reference | 0.72662 | 0.011 |
43DAP/reference | 0.71224 | 0.014 |
47DAP/reference | 0.81053 | 0.079 |
52DAP/reference | 0.79585 | 0.077 |
57DAP/reference | 0.70856 | 0.013 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09946 | 0.226 |
17DAP/reference | 0.9575 | 0.201 |
27DAP/reference | 0.80738 | 0.074 |
39DAP/reference | 1.10914 | 0.239 |
41DAP/reference | 0.93283 | 0.262 |
42DAP/reference | 0.67019 | 0.011 |
43DAP/reference | 1.06313 | 0.835 |
47DAP/reference | 0.85119 | 0.029 |
52DAP/reference | 0.96423 | 0.351 |
57DAP/reference | 1.08427 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84688 | 0.05 |
17DAP/reference | 0.89853 | 0.313 |
27DAP/reference | 0.78111 | 0.035 |
39DAP/reference | 0.78015 | 0.018 |
41DAP/reference | 0.88335 | 0.209 |
42DAP/reference | 0.73249 | 0.015 |
43DAP/reference | 0.73555 | 0.033 |
47DAP/reference | 0.8716 | 0.207 |
52DAP/reference | 0.82432 | 0.189 |
57DAP/reference | 0.58946 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00336 | 1 |
26DAP/20DAP | 1.19597 | 0.778 |
34DAP/26DAP | 1.25962 | 0.542 |
51DAP/34DAP | 1.07427 | 0.844 |
52DAP/51DAP | 1.46476 | 0.387 |
53DAP/52DAP | 1.14174 | 0.723 |
55DAP/53DAP | 1.18551 | 0.103 |
57DAP/55DAP | 0.81529 | 0.37 |
62DAP/57DAP | 1.18133 | 0.902 |
68DAP/62DAP | 0.96098 | 0.81 |
68DAP/14DAP | 1.01683 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.76135 | 0.129 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.24522 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.83337 | |
Mature Eggplant/Ripe Tomato | 8.79549 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.02262 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.24043 | 0.277 |
IL2-6/WTpooled | 0.35376 | 0.473 |
IL7-5/WTpooled | 0.55093 | 1 |
IL7-3/WTpooled | 0.94563 | 1 |
IL12-4/WTpooled | 0.90049 | 0.71 |
IL1-4/WTpooled | 0.59196 | 0.457 |
WT/WTpooled | 1.14449 | 0.686 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.43678 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08982 | 0.921 |
DC3000/delta hrp 6h | 1.55543 | 1 |
DC3000/delta hrp 12h | 1.03912 | 1 |
DC3000/delta hrp 24h | 1.0701 | 0.582 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 4.48014 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07655 | 1 |
Exp 36h | 2.05636 | 1 |
Exp 60h | 0.52203 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.72304 | |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 0.95307 | |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | 1.49726 | |
Time course 60hI-60hNI | 2.86278 | |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.4952 | 0.268 |
transgenic ySAMdc/azygous control (breaker) | 0.97322 | 1 |
transgenic ySAMdc/azygous control (red) | 1.25739 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96506 | 0.277 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.04093 | 1 |
Manapal/WT (break) | 0.7553 | 1 |
Manapal/WT (red) | 0.81412 | 0.242 |
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