Expression of 1-1-2.1.20.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98486 | 0.689 |
27DAP/17DAP | 0.76382 | 0.251 |
39DAP/27DAP | 1.17611 | 0.853 |
41DAP/39DAP | 0.86667 | 0.49 |
42DAP/41DAP | 1.27782 | 0.573 |
43DAP/42DAP | 1.10136 | 1 |
47DAP/43DAP | 1.05504 | 0.756 |
52DAP/47DAP | 1.02725 | 0.98 |
57DAP/52DAP | 0.95345 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9594 | 0.211 |
17DAP/reference | 0.98008 | 0.664 |
27DAP/reference | 0.95016 | 0.484 |
39DAP/reference | 0.99356 | 0.901 |
41DAP/reference | 1.04341 | 0.808 |
42DAP/reference | 0.97558 | 0.305 |
43DAP/reference | 1.06512 | 0.445 |
47DAP/reference | 1.15438 | 0.003 |
52DAP/reference | 1.0465 | 0.84 |
57DAP/reference | 1.10839 | 0.195 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19618 | 0.365 |
27DAP/17DAP | 1.0901 | 0.771 |
39DAP/27DAP | 0.95563 | 0.732 |
41DAP/39DAP | 1.10613 | 0.735 |
42DAP/41DAP | 0.8588 | 0.206 |
43DAP/42DAP | 0.56644 | 0.023 |
47DAP/43DAP | 0.94436 | 0.75 |
52DAP/47DAP | 1.22371 | 0.366 |
57DAP/52DAP | 1.07781 | 0.618 |
57DAP/7DAP | 0.836 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14387 | 0.332 |
17DAP/reference | 1.21336 | 0.693 |
27DAP/reference | 1.17929 | 0.088 |
39DAP/reference | 1.50377 | 0.01 |
41DAP/reference | 1.37035 | 0.037 |
42DAP/reference | 1.47736 | 0.013 |
43DAP/reference | 1.58503 | 0.007 |
47DAP/reference | 1.23579 | 0.2 |
52DAP/reference | 1.3788 | 0.008 |
57DAP/reference | 1.23627 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92948 | 0.268 |
17DAP/reference | 0.88085 | 0.046 |
27DAP/reference | 0.93367 | 0.317 |
39DAP/reference | 0.83797 | 0.108 |
41DAP/reference | 0.93153 | 0.364 |
42DAP/reference | 1.00341 | 1 |
43DAP/reference | 0.99632 | 0.721 |
47DAP/reference | 1.20846 | 0.043 |
52DAP/reference | 0.94674 | 0.28 |
57DAP/reference | 1.1893 | 0.094 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10129 | 0.273 |
17DAP/reference | 1.06395 | 0.824 |
27DAP/reference | 1.30704 | 0.02 |
39DAP/reference | 1.32181 | 0.026 |
41DAP/reference | 1.37444 | 0.029 |
42DAP/reference | 1.18342 | 0.091 |
43DAP/reference | 1.1603 | 0.336 |
47DAP/reference | 1.21627 | 0.05 |
52DAP/reference | 1.39393 | 0.083 |
57DAP/reference | 1.15767 | 0.531 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.19349 | 0.945 |
26DAP/20DAP | 1.23135 | 0.259 |
34DAP/26DAP | 0.93178 | 0.811 |
51DAP/34DAP | 1.32129 | 0.261 |
52DAP/51DAP | 1.24205 | 0.708 |
53DAP/52DAP | 0.91428 | 0.807 |
55DAP/53DAP | 0.98118 | 0.876 |
57DAP/55DAP | 1.01692 | 0.935 |
62DAP/57DAP | 1.0985 | 1 |
68DAP/62DAP | 0.80174 | 0.227 |
68DAP/14DAP | 0.89774 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95974 | 0.576 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.18369 | 0.055 |
Mature Green Tomato/Ripe Tomato | 0.71383 | 0.096 |
Immature Eggplant/Mature Eggplant | 2.67174 | 0.056 |
Ripe Pepper/Ripe Tomato | 4.58698 | 1 |
Mature Eggplant/Ripe Tomato | 0.48728 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.82502 | 0.958 |
12-2/M82 | 1.40784 | |
12-4/M82 | 0.85645 | 0.619 |
1-3/M82 | 0.99152 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.09493 | 0.695 |
3-2/M82 | 0.96971 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.26511 | 0.444 |
4-3-2/M82 | 0.84685 | |
4-3/M82 | 1.83239 | 0.268 |
5-3/M82 | 0.8414 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.9205 | |
7-1/M82 | 0.79677 | 0.803 |
7-2/M82 | 0.63538 | |
9-3-2/M82 | 1.03841 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.07802 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02088 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11154 | 0.914 |
DC3000/delta hrp 6h | 1.15588 | 0.857 |
DC3000/delta hrp 12h | 0.96887 | 1 |
DC3000/delta hrp 24h | 1.01861 | 0.743 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.69963 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.64596 | 0.025 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07365 | 1 |
Exp 36h | 1.03106 | 1 |
Exp 60h | 0.98841 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | 0.88719 | 0.713 |
Var 36h I row2-row1 | 0.87173 | |
Var 36h NI row2-row1 | 1.07203 | 1 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.12579 | 0.904 |
Time course 0hI-0hNI | 1.02701 | 1 |
Time course 12hI-12hNI | 0.94374 | 0.374 |
Time course 36hI-36hNI | 0.69426 | 0.023 |
Time course 60hI-60hNI | 0.19164 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.82489 | 0.239 |
transgenic ySAMdc/azygous control (breaker) | 0.84524 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.10113 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01428 | 0.448 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.35493 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.0823 | 0.09 |
Manapal/WT (break) | 2.22269 | 0.14 |
Manapal/WT (red) | 1.37705 | 0.134 |
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