Expression of 1-1-2.1.3.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.74397 | 0.04 |
27DAP/17DAP | 1.01136 | 0.984 |
39DAP/27DAP | 2.15137 | 0.175 |
41DAP/39DAP | 0.98434 | 0.868 |
42DAP/41DAP | 1.01709 | 1 |
43DAP/42DAP | 1.12427 | 1 |
47DAP/43DAP | 0.75908 | 0.314 |
52DAP/47DAP | 1.43555 | 0.514 |
57DAP/52DAP | 1.21894 | 0.853 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88781 | 0.075 |
17DAP/reference | 0.74697 | 0.008 |
27DAP/reference | 0.93459 | 0.327 |
39DAP/reference | 0.87989 | 0.056 |
41DAP/reference | 0.80192 | 0.016 |
42DAP/reference | 0.92776 | 0.048 |
43DAP/reference | 0.99579 | 0.882 |
47DAP/reference | 1.02641 | 1 |
52DAP/reference | 1.11962 | 0.407 |
57DAP/reference | 1.28399 | 0.014 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7811 | 0.228 |
27DAP/17DAP | 1.12084 | 0.74 |
39DAP/27DAP | 1.08074 | 0.799 |
41DAP/39DAP | 1.14027 | 0.79 |
42DAP/41DAP | 0.87164 | 0.396 |
43DAP/42DAP | 1.1145 | 0.83 |
47DAP/43DAP | 1.18611 | 0.276 |
52DAP/47DAP | 0.70445 | 0.083 |
57DAP/52DAP | 0.81251 | 0.331 |
57DAP/7DAP | 1.28221 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17371 | 0.481 |
17DAP/reference | 1.20758 | 0.328 |
27DAP/reference | 1.14969 | 0.131 |
39DAP/reference | 1.30026 | 0.053 |
41DAP/reference | 1.30615 | 0.029 |
42DAP/reference | 1.23282 | 0.076 |
43DAP/reference | 0.99452 | 0.665 |
47DAP/reference | 1.0281 | 0.837 |
52DAP/reference | 1.38023 | 0.015 |
57DAP/reference | 1.3608 | 0.108 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85357 | 0.083 |
17DAP/reference | 0.71371 | 0.006 |
27DAP/reference | 0.87507 | 0.108 |
39DAP/reference | 0.99368 | 0.642 |
41DAP/reference | 1.10874 | 0.149 |
42DAP/reference | 0.95856 | 0.321 |
43DAP/reference | 0.95285 | 0.516 |
47DAP/reference | 0.90322 | 0.12 |
52DAP/reference | 0.99278 | 0.666 |
57DAP/reference | 0.79468 | 0.011 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30996 | 0.296 |
17DAP/reference | 1.06752 | 0.825 |
27DAP/reference | 1.37546 | 0.081 |
39DAP/reference | 1.22552 | 0.307 |
41DAP/reference | 1.43613 | 0.249 |
42DAP/reference | 1.20413 | 0.265 |
43DAP/reference | 1.19919 | 0.459 |
47DAP/reference | 0.84368 | 0.066 |
52DAP/reference | 1.07939 | 0.657 |
57DAP/reference | 1.26755 | 0.083 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09028 | 0.966 |
26DAP/20DAP | 1.92054 | 0.269 |
34DAP/26DAP | 0.98627 | 1 |
51DAP/34DAP | 1.56109 | |
52DAP/51DAP | 0.95968 | 1 |
53DAP/52DAP | 1.20179 | 0.47 |
55DAP/53DAP | 1.27626 | 0.666 |
57DAP/55DAP | 0.95808 | 0.855 |
62DAP/57DAP | 0.85757 | 0.871 |
68DAP/62DAP | 1.35421 | 0.89 |
68DAP/14DAP | 1.23072 | 0.676 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.67524 | 0.097 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.30449 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.9593 | 0.715 |
Immature Eggplant/Mature Eggplant | 1.75147 | 0.105 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 2.96843 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.25986 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.07441 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.09069 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.00712 | |
7-2/M82 | 1.02747 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93728 | 0.321 |
IL2-6/WTpooled | 0.59845 | 0.473 |
IL7-5/WTpooled | 0.73469 | 1 |
IL7-3/WTpooled | 1.1083 | 1 |
IL12-4/WTpooled | 0.89725 | 1 |
IL1-4/WTpooled | 1.15575 | 1 |
WT/WTpooled | 1.36 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90144 | 0.226 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97779 | 1 |
DC3000/delta hrp 6h | 1.00049 | 0.95 |
DC3000/delta hrp 12h | 1.13438 | 1 |
DC3000/delta hrp 24h | 2.29263 | 0.025 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.40013 | |
DC3000 delta B/DC3000 delta AB | 1.64266 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97862 | 1 |
Exp 36h | 1.18984 | 1 |
Exp 60h | 1.30654 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.8396 | 0.933 |
Var 12h I row2-row1 | 0.72026 | 0.418 |
Var 12h NI row2-row1 | 1.41637 | |
Var 36h I row2-row1 | 1.27117 | 0.283 |
Var 36h NI row2-row1 | 29.0603 | |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.08802 | 1 |
Time course 0hI-0hNI | 1.01391 | 1 |
Time course 12hI-12hNI | 1.2901 | 0.611 |
Time course 36hI-36hNI | 1.66381 | 0.01 |
Time course 60hI-60hNI | 1.92172 | 0.115 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98191 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 0.83181 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.87972 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98825 | 0.673 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.6903 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.72235 | 0.172 |
Manapal/WT (break) | 0.85965 | 1 |
Manapal/WT (red) | 1.35803 | 0.413 |
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