Expression of 1-1-2.1.4.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79946 | 0.285 |
27DAP/17DAP | 1.0138 | 1 |
39DAP/27DAP | 1.31044 | 0.44 |
41DAP/39DAP | 1.10994 | 0.591 |
42DAP/41DAP | 0.85825 | 1 |
43DAP/42DAP | 0.91927 | 0.639 |
47DAP/43DAP | 1.69583 | 0.321 |
52DAP/47DAP | 0.84967 | 0.609 |
57DAP/52DAP | 1.15861 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.72559 | 0.062 |
17DAP/reference | 0.79623 | 0.008 |
27DAP/reference | 0.85813 | 0.187 |
39DAP/reference | 0.8743 | 0.121 |
41DAP/reference | 0.76105 | 0.014 |
42DAP/reference | 0.88732 | 0.019 |
43DAP/reference | 0.90228 | 0.302 |
47DAP/reference | 0.9443 | 0.322 |
52DAP/reference | 0.9163 | 0.172 |
57DAP/reference | 1.11374 | 0.321 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.77194 | 0.178 |
27DAP/17DAP | 1.40753 | 0.771 |
39DAP/27DAP | 1.3667 | 0.178 |
41DAP/39DAP | 0.80734 | 0.495 |
42DAP/41DAP | 0.93194 | 0.565 |
43DAP/42DAP | 1.36359 | 0.297 |
47DAP/43DAP | 1.7619 | 0.529 |
52DAP/47DAP | 1.10363 | 0.71 |
57DAP/52DAP | 1.05613 | 0.887 |
57DAP/7DAP | 1.35471 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94757 | 0.445 |
17DAP/reference | 1.17128 | 0.011 |
27DAP/reference | 1.16094 | 0.03 |
39DAP/reference | 1.34477 | 0.012 |
41DAP/reference | 1.28026 | 0.043 |
42DAP/reference | 1.35318 | 0.03 |
43DAP/reference | 1.11253 | 0.188 |
47DAP/reference | 1.09632 | 0.659 |
52DAP/reference | 1.2012 | 0.071 |
57DAP/reference | 1.29807 | 0.029 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85378 | 0.286 |
17DAP/reference | 0.63732 | 0.024 |
27DAP/reference | 0.85144 | 0.144 |
39DAP/reference | 1.06661 | 1 |
41DAP/reference | 1.22721 | 0.215 |
42DAP/reference | 0.8376 | 0.028 |
43DAP/reference | 0.87127 | 0.111 |
47DAP/reference | 0.96984 | 0.434 |
52DAP/reference | 0.84485 | 0.171 |
57DAP/reference | 0.94437 | 0.338 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 4.28313 | 0.033 |
17DAP/reference | 1.11341 | 0.578 |
27DAP/reference | 2.57966 | 0.171 |
39DAP/reference | 1.13946 | 0.05 |
41DAP/reference | 1.00878 | 1 |
42DAP/reference | 5.8904 | 0.057 |
43DAP/reference | 6.12759 | 0.04 |
47DAP/reference | 0.8769 | 0.066 |
52DAP/reference | 2.43689 | 0.631 |
57DAP/reference | 1.88043 | 0.298 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.18526 | 0.966 |
26DAP/20DAP | 2.05369 | |
34DAP/26DAP | 0.69821 | |
51DAP/34DAP | 1.1421 | 0.706 |
52DAP/51DAP | 0.74685 | 0.079 |
53DAP/52DAP | 1.00896 | 0.97 |
55DAP/53DAP | 1.32519 | 0.622 |
57DAP/55DAP | 1.12554 | 0.249 |
62DAP/57DAP | 0.8724 | |
68DAP/62DAP | 1.87744 | 0.056 |
68DAP/14DAP | 2.07242 | 0.045 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.00021 | 0.737 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.37234 | |
Mature Green Tomato/Ripe Tomato | 1.02606 | 0.66 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.30367 | |
Mature Eggplant/Ripe Tomato | 1.75025 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93985 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.56346 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.22241 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.4315 | |
4-3/M82 | 1.42803 | |
5-3/M82 | 0.82355 | 0.387 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.539 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.72414 | 1 |
IL2-6/WTpooled | 0.9846 | 1 |
IL7-5/WTpooled | 0.95275 | 1 |
IL7-3/WTpooled | 1.11891 | 1 |
IL12-4/WTpooled | 1.11137 | 0.737 |
IL1-4/WTpooled | 0.95915 | 0.699 |
WT/WTpooled | 1.00715 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 2.55645 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.8868 | 0.849 |
DC3000/delta hrp 6h | 0.63565 | 0.95 |
DC3000/delta hrp 12h | 0.98381 | 1 |
DC3000/delta hrp 24h | 0.54448 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.36185 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.27615 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.80344 | 0.265 |
Exp 36h | 0.64451 | 0.419 |
Exp 60h | 0.47268 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.996 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 0.85765 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.88996 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98512 | 0.5 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.72216 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.47718 | 0.086 |
Manapal/WT (break) | 1.66611 | 0.381 |
Manapal/WT (red) | 0.43992 | 0.181 |
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