Expression of 1-1-2.1.4.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.799460.285
27DAP/17DAP1.01381
39DAP/27DAP1.310440.44
41DAP/39DAP1.109940.591
42DAP/41DAP0.858251
43DAP/42DAP0.919270.639
47DAP/43DAP1.695830.321
52DAP/47DAP0.849670.609
57DAP/52DAP1.158610.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.725590.062
17DAP/reference0.796230.008
27DAP/reference0.858130.187
39DAP/reference0.87430.121
41DAP/reference0.761050.014
42DAP/reference0.887320.019
43DAP/reference0.902280.302
47DAP/reference0.94430.322
52DAP/reference0.91630.172
57DAP/reference1.113740.321

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.771940.178
27DAP/17DAP1.407530.771
39DAP/27DAP1.36670.178
41DAP/39DAP0.807340.495
42DAP/41DAP0.931940.565
43DAP/42DAP1.363590.297
47DAP/43DAP1.76190.529
52DAP/47DAP1.103630.71
57DAP/52DAP1.056130.887
57DAP/7DAP1.35471

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.947570.445
17DAP/reference1.171280.011
27DAP/reference1.160940.03
39DAP/reference1.344770.012
41DAP/reference1.280260.043
42DAP/reference1.353180.03
43DAP/reference1.112530.188
47DAP/reference1.096320.659
52DAP/reference1.20120.071
57DAP/reference1.298070.029

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.853780.286
17DAP/reference0.637320.024
27DAP/reference0.851440.144
39DAP/reference1.066611
41DAP/reference1.227210.215
42DAP/reference0.83760.028
43DAP/reference0.871270.111
47DAP/reference0.969840.434
52DAP/reference0.844850.171
57DAP/reference0.944370.338

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference4.283130.033
17DAP/reference1.113410.578
27DAP/reference2.579660.171
39DAP/reference1.139460.05
41DAP/reference1.008781
42DAP/reference5.89040.057
43DAP/reference6.127590.04
47DAP/reference0.87690.066
52DAP/reference2.436890.631
57DAP/reference1.880430.298

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.185260.966
26DAP/20DAP2.05369
34DAP/26DAP0.69821
51DAP/34DAP1.14210.706
52DAP/51DAP0.746850.079
53DAP/52DAP1.008960.97
55DAP/53DAP1.325190.622
57DAP/55DAP1.125540.249
62DAP/57DAP0.8724
68DAP/62DAP1.877440.056
68DAP/14DAP2.072420.045

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.000210.737

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.37234
Mature Green Tomato/Ripe Tomato1.026060.66
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.30367
Mature Eggplant/Ripe Tomato1.750251

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.93985
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.56346
1-3/M82N/AN/A
2-1-1/M821.22241
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.4315
4-3/M821.42803
5-3/M820.823550.387
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.539

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.724141
IL2-6/WTpooled0.98461
IL7-5/WTpooled0.952751
IL7-3/WTpooled1.118911
IL12-4/WTpooled1.111370.737
IL1-4/WTpooled0.959150.699
WT/WTpooled1.007151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.556451

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.88680.849
DC3000/delta hrp 6h0.635650.95
DC3000/delta hrp 12h0.983811
DC3000/delta hrp 24h0.544480.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.361850.023
DC3000 delta B/DC3000 delta AB0.276150.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.803440.265
Exp 36h0.644510.419
Exp 60h0.472680.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.9961
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.857650.49
transgenic ySAMdc/azygous control (red)0.889961

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.985120.5

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.722160.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.477180.086
Manapal/WT (break)1.666110.381
Manapal/WT (red)0.439920.181