Expression of 1-1-2.1.5.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.839890.173
27DAP/17DAP0.985771
39DAP/27DAP1.069140.995
41DAP/39DAP0.962420.841
42DAP/41DAP0.994261
43DAP/42DAP0.955210.822
47DAP/43DAP0.899530.663
52DAP/47DAP0.842950.559
57DAP/52DAP1.067950.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.081250.188
17DAP/reference1.049180.427
27DAP/reference0.948270.327
39DAP/reference0.941330.298
41DAP/reference1.168590.552
42DAP/reference1.000530.707
43DAP/reference1.016350.812
47DAP/reference1.024270.794
52DAP/reference0.874310.051
57DAP/reference0.937210.051

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.823990.051
27DAP/17DAP1.060760.805
39DAP/27DAP1.062080.623
41DAP/39DAP1.108210.753
42DAP/41DAP1.028220.81
43DAP/42DAP0.984750.875
47DAP/43DAP1.049360.69
52DAP/47DAP0.911390.177
57DAP/52DAP0.913970.411
57DAP/7DAP0.903471

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.987610.024
17DAP/reference2.046860.006
27DAP/reference1.438430.012
39DAP/reference1.744750.005
41DAP/reference1.457260.017
42DAP/reference1.583690.011
43DAP/reference1.291410.019
47DAP/reference1.293990.067
52DAP/reference1.53640.009
57DAP/reference1.619310.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.261480.062
17DAP/reference1.046730.508
27DAP/reference1.014941
39DAP/reference0.979060.509
41DAP/reference0.818780.028
42DAP/reference0.95340.321
43DAP/reference1.001780.875
47DAP/reference0.955980.221
52DAP/reference1.001541
57DAP/reference1.059850.688

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.687990.017
17DAP/reference1.177010.258
27DAP/reference1.123140.216
39DAP/reference1.294110.046
41DAP/reference1.165530.077
42DAP/reference1.149440.443
43DAP/reference1.155020.241
47DAP/reference0.956430.325
52DAP/reference1.239190.198
57DAP/reference0.801680.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.010661
26DAP/20DAP1.06480.813
34DAP/26DAP1.018311
51DAP/34DAP0.993040.927
52DAP/51DAP1.110990.295
53DAP/52DAP1.114470.662
55DAP/53DAP0.911440.592
57DAP/55DAP0.825350.286
62DAP/57DAP0.959140.681
68DAP/62DAP0.803590.177
68DAP/14DAP0.955611

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.277620.496

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.859020.329
Mature Green Tomato/Ripe Tomato0.821260.132
Immature Eggplant/Mature Eggplant2.512510.05
Ripe Pepper/Ripe Tomato1.172551
Mature Eggplant/Ripe Tomato0.897431

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.058550.742
1-1-2/M821.09742
12-2/M82N/AN/A
12-4/M821.193021
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.265320.549
4-1-1/M820.88711
4-1/M821.35612
4-3-2/M821.165551
4-3/M821.216380.268
5-3/M820.971
6-2/M821.13111
6-3/M820.68035
7-1/M820.880981
7-2/M821.035941
9-3-2/M821.105581

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.914340.321
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.916811
IL7-3/WTpooled1.056741
IL12-4/WTpooled0.909611
IL1-4/WTpooled0.906480.699
WT/WTpooled1.119151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.04741

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.961691
DC3000/delta hrp 6h1.040241
DC3000/delta hrp 12h1.047641
DC3000/delta hrp 24h0.73150.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.117490.333
DC3000 delta B/DC3000 delta AB1.029570.593

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.105481
Exp 36h1.628170.489
Exp 60h1.303470.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988151
Var 0h1.155320.25
Var 12h I row2-row11.091450.692
Var 12h NI row2-row11.074361
Var 36h I row2-row11.073680.908
Var 36h NI row2-row10.824590.45
Var 60h I row2-row10.928310.952
Var 60h NI row2-row10.941791
Time course 0hI-0hNI0.884140.136
Time course 12hI-12hNI1.052650.55
Time course 36hI-36hNI1.289860.166
Time course 60hI-60hNI1.634630.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.983240.662
transgenic ySAMdc/azygous control (breaker)0.958990.49
transgenic ySAMdc/azygous control (red)1.034740.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.012550.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.303490.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.83931
Manapal/WT (break)1.01761
Manapal/WT (red)0.991331