Expression of 1-1-2.1.5.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83989 | 0.173 |
27DAP/17DAP | 0.98577 | 1 |
39DAP/27DAP | 1.06914 | 0.995 |
41DAP/39DAP | 0.96242 | 0.841 |
42DAP/41DAP | 0.99426 | 1 |
43DAP/42DAP | 0.95521 | 0.822 |
47DAP/43DAP | 0.89953 | 0.663 |
52DAP/47DAP | 0.84295 | 0.559 |
57DAP/52DAP | 1.06795 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08125 | 0.188 |
17DAP/reference | 1.04918 | 0.427 |
27DAP/reference | 0.94827 | 0.327 |
39DAP/reference | 0.94133 | 0.298 |
41DAP/reference | 1.16859 | 0.552 |
42DAP/reference | 1.00053 | 0.707 |
43DAP/reference | 1.01635 | 0.812 |
47DAP/reference | 1.02427 | 0.794 |
52DAP/reference | 0.87431 | 0.051 |
57DAP/reference | 0.93721 | 0.051 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82399 | 0.051 |
27DAP/17DAP | 1.06076 | 0.805 |
39DAP/27DAP | 1.06208 | 0.623 |
41DAP/39DAP | 1.10821 | 0.753 |
42DAP/41DAP | 1.02822 | 0.81 |
43DAP/42DAP | 0.98475 | 0.875 |
47DAP/43DAP | 1.04936 | 0.69 |
52DAP/47DAP | 0.91139 | 0.177 |
57DAP/52DAP | 0.91397 | 0.411 |
57DAP/7DAP | 0.90347 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.98761 | 0.024 |
17DAP/reference | 2.04686 | 0.006 |
27DAP/reference | 1.43843 | 0.012 |
39DAP/reference | 1.74475 | 0.005 |
41DAP/reference | 1.45726 | 0.017 |
42DAP/reference | 1.58369 | 0.011 |
43DAP/reference | 1.29141 | 0.019 |
47DAP/reference | 1.29399 | 0.067 |
52DAP/reference | 1.5364 | 0.009 |
57DAP/reference | 1.61931 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26148 | 0.062 |
17DAP/reference | 1.04673 | 0.508 |
27DAP/reference | 1.01494 | 1 |
39DAP/reference | 0.97906 | 0.509 |
41DAP/reference | 0.81878 | 0.028 |
42DAP/reference | 0.9534 | 0.321 |
43DAP/reference | 1.00178 | 0.875 |
47DAP/reference | 0.95598 | 0.221 |
52DAP/reference | 1.00154 | 1 |
57DAP/reference | 1.05985 | 0.688 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.68799 | 0.017 |
17DAP/reference | 1.17701 | 0.258 |
27DAP/reference | 1.12314 | 0.216 |
39DAP/reference | 1.29411 | 0.046 |
41DAP/reference | 1.16553 | 0.077 |
42DAP/reference | 1.14944 | 0.443 |
43DAP/reference | 1.15502 | 0.241 |
47DAP/reference | 0.95643 | 0.325 |
52DAP/reference | 1.23919 | 0.198 |
57DAP/reference | 0.80168 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01066 | 1 |
26DAP/20DAP | 1.0648 | 0.813 |
34DAP/26DAP | 1.01831 | 1 |
51DAP/34DAP | 0.99304 | 0.927 |
52DAP/51DAP | 1.11099 | 0.295 |
53DAP/52DAP | 1.11447 | 0.662 |
55DAP/53DAP | 0.91144 | 0.592 |
57DAP/55DAP | 0.82535 | 0.286 |
62DAP/57DAP | 0.95914 | 0.681 |
68DAP/62DAP | 0.80359 | 0.177 |
68DAP/14DAP | 0.95561 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.27762 | 0.496 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.85902 | 0.329 |
Mature Green Tomato/Ripe Tomato | 0.82126 | 0.132 |
Immature Eggplant/Mature Eggplant | 2.51251 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.17255 | 1 |
Mature Eggplant/Ripe Tomato | 0.89743 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05855 | 0.742 |
1-1-2/M82 | 1.09742 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.19302 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.26532 | 0.549 |
4-1-1/M82 | 0.88711 | |
4-1/M82 | 1.35612 | |
4-3-2/M82 | 1.16555 | 1 |
4-3/M82 | 1.21638 | 0.268 |
5-3/M82 | 0.97 | 1 |
6-2/M82 | 1.13111 | |
6-3/M82 | 0.68035 | |
7-1/M82 | 0.88098 | 1 |
7-2/M82 | 1.03594 | 1 |
9-3-2/M82 | 1.10558 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.91434 | 0.321 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.91681 | 1 |
IL7-3/WTpooled | 1.05674 | 1 |
IL12-4/WTpooled | 0.90961 | 1 |
IL1-4/WTpooled | 0.90648 | 0.699 |
WT/WTpooled | 1.11915 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0474 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96169 | 1 |
DC3000/delta hrp 6h | 1.04024 | 1 |
DC3000/delta hrp 12h | 1.04764 | 1 |
DC3000/delta hrp 24h | 0.7315 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11749 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.02957 | 0.593 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10548 | 1 |
Exp 36h | 1.62817 | 0.489 |
Exp 60h | 1.30347 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98815 | 1 |
Var 0h | 1.15532 | 0.25 |
Var 12h I row2-row1 | 1.09145 | 0.692 |
Var 12h NI row2-row1 | 1.07436 | 1 |
Var 36h I row2-row1 | 1.07368 | 0.908 |
Var 36h NI row2-row1 | 0.82459 | 0.45 |
Var 60h I row2-row1 | 0.92831 | 0.952 |
Var 60h NI row2-row1 | 0.94179 | 1 |
Time course 0hI-0hNI | 0.88414 | 0.136 |
Time course 12hI-12hNI | 1.05265 | 0.55 |
Time course 36hI-36hNI | 1.28986 | 0.166 |
Time course 60hI-60hNI | 1.63463 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98324 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 0.95899 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.03474 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01255 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.30349 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.8393 | 1 |
Manapal/WT (break) | 1.0176 | 1 |
Manapal/WT (red) | 0.99133 | 1 |
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