Expression of 1-1-2.1.5.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9603 | 0.722 |
27DAP/17DAP | 1.10319 | 0.89 |
39DAP/27DAP | 0.86039 | 0.719 |
41DAP/39DAP | 1.20593 | 0.735 |
42DAP/41DAP | 1.18827 | 0.73 |
43DAP/42DAP | 0.89893 | 0.801 |
47DAP/43DAP | 1.29154 | 0.555 |
52DAP/47DAP | 0.89521 | 0.712 |
57DAP/52DAP | 0.94929 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.69434 | 0.036 |
17DAP/reference | 0.78852 | 0.038 |
27DAP/reference | 0.86819 | 0.182 |
39DAP/reference | 0.74299 | 0.034 |
41DAP/reference | 0.83084 | 0.114 |
42DAP/reference | 1.08871 | 0.431 |
43DAP/reference | 0.92911 | 0.316 |
47DAP/reference | 0.98797 | 0.445 |
52DAP/reference | 0.76798 | 0.075 |
57DAP/reference | 0.76836 | 0.02 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97671 | 0.716 |
27DAP/17DAP | 0.97393 | 0.887 |
39DAP/27DAP | 0.83514 | 0.265 |
41DAP/39DAP | 0.99098 | 0.997 |
42DAP/41DAP | 1.16386 | 0.327 |
43DAP/42DAP | 1.07396 | 0.664 |
47DAP/43DAP | 0.86749 | 0.219 |
52DAP/47DAP | 1.21834 | 0.412 |
57DAP/52DAP | 1.13086 | 0.858 |
57DAP/7DAP | 1.0504 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79135 | 0.104 |
17DAP/reference | 0.74318 | 0.02 |
27DAP/reference | 0.85876 | 0.037 |
39DAP/reference | 0.82551 | 0.027 |
41DAP/reference | 0.80053 | 0.031 |
42DAP/reference | 0.706 | 0.011 |
43DAP/reference | 0.72024 | 0.033 |
47DAP/reference | 0.91207 | 0.383 |
52DAP/reference | 0.71478 | 0.017 |
57DAP/reference | 0.65139 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73961 | 0.062 |
17DAP/reference | 0.96734 | 0.461 |
27DAP/reference | 0.77631 | 0.1 |
39DAP/reference | 0.81832 | 0.077 |
41DAP/reference | 0.95818 | 0.403 |
42DAP/reference | 1.42819 | 0.22 |
43DAP/reference | 0.88906 | 0.108 |
47DAP/reference | 0.79464 | 0.055 |
52DAP/reference | 0.90843 | 0.143 |
57DAP/reference | 1.11236 | 0.437 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93816 | 0.335 |
17DAP/reference | 0.74098 | 0.029 |
27DAP/reference | 0.78301 | 0.076 |
39DAP/reference | 0.76763 | 0.017 |
41DAP/reference | 0.86872 | 0.209 |
42DAP/reference | 1.01588 | 0.816 |
43DAP/reference | 0.8313 | 0.03 |
47DAP/reference | 1.01728 | 1 |
52DAP/reference | 0.89729 | 0.351 |
57DAP/reference | 0.73839 | 0.036 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94261 | 1 |
26DAP/20DAP | 0.82965 | |
34DAP/26DAP | 1.88566 | 1 |
51DAP/34DAP | 0.59094 | 0.063 |
52DAP/51DAP | 0.93997 | 1 |
53DAP/52DAP | 1.34228 | 0.783 |
55DAP/53DAP | 1.20379 | 1 |
57DAP/55DAP | 1.02564 | |
62DAP/57DAP | 0.62751 | |
68DAP/62DAP | 0.77964 | 0.641 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.92069 | 0.253 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.59427 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.28104 | |
Mature Eggplant/Ripe Tomato | 0.08354 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.28659 | |
1-1-2/M82 | 1.12901 | 1 |
12-2/M82 | 1.16616 | |
12-4/M82 | 1.0809 | 1 |
1-3/M82 | 1.36287 | |
2-1-1/M82 | 0.82123 | 0.92 |
2-1/M82 | 0.85763 | |
2-6/M82 | 1.08023 | 0.594 |
3-2/M82 | 1.33305 | |
4-1-1/M82 | 1.1095 | |
4-1/M82 | 1.24085 | |
4-3-2/M82 | 1.37125 | |
4-3/M82 | 1.85259 | 0.268 |
5-3/M82 | 0.82502 | 0.447 |
6-2/M82 | 1.42775 | |
6-3/M82 | 0.76 | 0.982 |
7-1/M82 | 1.20682 | |
7-2/M82 | 1.22338 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01578 | 1 |
IL2-6/WTpooled | 1.17936 | 0.659 |
IL7-5/WTpooled | 0.92931 | 1 |
IL7-3/WTpooled | 0.84757 | |
IL12-4/WTpooled | 1.02297 | 1 |
IL1-4/WTpooled | 1.27748 | 1 |
WT/WTpooled | 0.93622 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.81334 | 0.341 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07357 | 0.724 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.00715 | 1 |
DC3000/delta hrp 24h | 1.25167 | 0.09 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.78668 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98167 | 1 |
Var 0h | 0.91215 | 0.196 |
Var 12h I row2-row1 | 1.24324 | 0.125 |
Var 12h NI row2-row1 | 1.22274 | 1 |
Var 36h I row2-row1 | 0.89324 | 0.438 |
Var 36h NI row2-row1 | 0.72383 | 0.478 |
Var 60h I row2-row1 | 0.9089 | 0.582 |
Var 60h NI row2-row1 | 0.96439 | 0.904 |
Time course 0hI-0hNI | 0.98535 | 0.947 |
Time course 12hI-12hNI | 1.01137 | 0.892 |
Time course 36hI-36hNI | 0.86023 | 0.139 |
Time course 60hI-60hNI | 0.64247 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93345 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 1.02521 | 1 |
transgenic ySAMdc/azygous control (red) | 0.94214 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93637 | 0.081 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06537 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.90354 | 1 |
Manapal/WT (break) | 0.82745 | 1 |
Manapal/WT (red) | 1.11276 | 0.164 |
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