Expression of 1-1-2.1.5.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.96030.722
27DAP/17DAP1.103190.89
39DAP/27DAP0.860390.719
41DAP/39DAP1.205930.735
42DAP/41DAP1.188270.73
43DAP/42DAP0.898930.801
47DAP/43DAP1.291540.555
52DAP/47DAP0.895210.712
57DAP/52DAP0.949290.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.694340.036
17DAP/reference0.788520.038
27DAP/reference0.868190.182
39DAP/reference0.742990.034
41DAP/reference0.830840.114
42DAP/reference1.088710.431
43DAP/reference0.929110.316
47DAP/reference0.987970.445
52DAP/reference0.767980.075
57DAP/reference0.768360.02

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.976710.716
27DAP/17DAP0.973930.887
39DAP/27DAP0.835140.265
41DAP/39DAP0.990980.997
42DAP/41DAP1.163860.327
43DAP/42DAP1.073960.664
47DAP/43DAP0.867490.219
52DAP/47DAP1.218340.412
57DAP/52DAP1.130860.858
57DAP/7DAP1.05041

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.791350.104
17DAP/reference0.743180.02
27DAP/reference0.858760.037
39DAP/reference0.825510.027
41DAP/reference0.800530.031
42DAP/reference0.7060.011
43DAP/reference0.720240.033
47DAP/reference0.912070.383
52DAP/reference0.714780.017
57DAP/reference0.651390.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.739610.062
17DAP/reference0.967340.461
27DAP/reference0.776310.1
39DAP/reference0.818320.077
41DAP/reference0.958180.403
42DAP/reference1.428190.22
43DAP/reference0.889060.108
47DAP/reference0.794640.055
52DAP/reference0.908430.143
57DAP/reference1.112360.437

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.938160.335
17DAP/reference0.740980.029
27DAP/reference0.783010.076
39DAP/reference0.767630.017
41DAP/reference0.868720.209
42DAP/reference1.015880.816
43DAP/reference0.83130.03
47DAP/reference1.017281
52DAP/reference0.897290.351
57DAP/reference0.738390.036

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.942611
26DAP/20DAP0.82965
34DAP/26DAP1.885661
51DAP/34DAP0.590940.063
52DAP/51DAP0.939971
53DAP/52DAP1.342280.783
55DAP/53DAP1.203791
57DAP/55DAP1.02564
62DAP/57DAP0.62751
68DAP/62DAP0.779640.641
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.920690.253

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.59427
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.28104
Mature Eggplant/Ripe Tomato0.083541

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.28659
1-1-2/M821.129011
12-2/M821.16616
12-4/M821.08091
1-3/M821.36287
2-1-1/M820.821230.92
2-1/M820.85763
2-6/M821.080230.594
3-2/M821.33305
4-1-1/M821.1095
4-1/M821.24085
4-3-2/M821.37125
4-3/M821.852590.268
5-3/M820.825020.447
6-2/M821.42775
6-3/M820.760.982
7-1/M821.20682
7-2/M821.223381
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.015781
IL2-6/WTpooled1.179360.659
IL7-5/WTpooled0.929311
IL7-3/WTpooled0.84757
IL12-4/WTpooled1.022971
IL1-4/WTpooled1.277481
WT/WTpooled0.936221

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.813340.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.073570.724
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.007151
DC3000/delta hrp 24h1.251670.09

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.78668

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.981671
Var 0h0.912150.196
Var 12h I row2-row11.243240.125
Var 12h NI row2-row11.222741
Var 36h I row2-row10.893240.438
Var 36h NI row2-row10.723830.478
Var 60h I row2-row10.90890.582
Var 60h NI row2-row10.964390.904
Time course 0hI-0hNI0.985350.947
Time course 12hI-12hNI1.011370.892
Time course 36hI-36hNI0.860230.139
Time course 60hI-60hNI0.642470.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.933450.567
transgenic ySAMdc/azygous control (breaker)1.025211
transgenic ySAMdc/azygous control (red)0.942141

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.936370.081

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.065370.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.903541
Manapal/WT (break)0.827451
Manapal/WT (red)1.112760.164