Expression of 1-1-2.1.6.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.07909 | 0.183 |
27DAP/17DAP | 1.34611 | 0.801 |
39DAP/27DAP | 1.11877 | 0.82 |
41DAP/39DAP | 1.37658 | 0.293 |
42DAP/41DAP | 1.33773 | 0.619 |
43DAP/42DAP | 1.3485 | 0.595 |
47DAP/43DAP | 1.23866 | 0.618 |
52DAP/47DAP | 0.73391 | 0.362 |
57DAP/52DAP | 1.3432 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04907 | 0.207 |
17DAP/reference | 0.99661 | 0.904 |
27DAP/reference | 0.9811 | 0.595 |
39DAP/reference | 1.06645 | 0.504 |
41DAP/reference | 1.04695 | 0.451 |
42DAP/reference | 0.95644 | 0.081 |
43DAP/reference | 0.99983 | 0.942 |
47DAP/reference | 1.00824 | 0.937 |
52DAP/reference | 0.99087 | 0.654 |
57DAP/reference | 0.94098 | 0.106 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23274 | 0.046 |
27DAP/17DAP | 1.01269 | 0.98 |
39DAP/27DAP | 1.07877 | 0.623 |
41DAP/39DAP | 0.98343 | 0.986 |
42DAP/41DAP | 1.08683 | 0.872 |
43DAP/42DAP | 0.96862 | 0.538 |
47DAP/43DAP | 0.95896 | 0.722 |
52DAP/47DAP | 1.04741 | 0.835 |
57DAP/52DAP | 0.74917 | 0.102 |
57DAP/7DAP | 0.87663 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.45696 | 0.044 |
17DAP/reference | 1.22428 | 0.084 |
27DAP/reference | 0.94061 | 0.325 |
39DAP/reference | 0.91662 | 0.23 |
41DAP/reference | 1.23434 | 0.171 |
42DAP/reference | 1.22084 | 0.308 |
43DAP/reference | 1.13095 | 0.124 |
47DAP/reference | 1.16435 | 0.854 |
52DAP/reference | 1.23487 | 0.058 |
57DAP/reference | 1.13604 | 0.198 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03486 | 0.41 |
17DAP/reference | 1.00904 | 0.904 |
27DAP/reference | 0.95804 | 0.249 |
39DAP/reference | 0.90849 | 0.274 |
41DAP/reference | 0.97978 | 0.545 |
42DAP/reference | 0.9621 | 0.289 |
43DAP/reference | 0.98374 | 0.657 |
47DAP/reference | 0.92177 | 0.024 |
52DAP/reference | 1.00049 | 0.761 |
57DAP/reference | 1.04811 | 0.593 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16132 | 0.444 |
17DAP/reference | 1.06517 | 0.706 |
27DAP/reference | 0.97104 | 0.657 |
39DAP/reference | 1.1829 | 0.353 |
41DAP/reference | 1.0656 | 0.939 |
42DAP/reference | 1.03266 | 0.979 |
43DAP/reference | 1.07538 | 0.531 |
47DAP/reference | 0.96031 | 0.306 |
52DAP/reference | 1.26568 | 0.335 |
57DAP/reference | 0.84306 | 0.042 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96724 | 1 |
26DAP/20DAP | 0.9855 | 1 |
34DAP/26DAP | 0.94671 | 0.961 |
51DAP/34DAP | 1.5026 | 0.445 |
52DAP/51DAP | 0.89478 | 1 |
53DAP/52DAP | 0.97078 | 0.862 |
55DAP/53DAP | 0.88786 | 0.43 |
57DAP/55DAP | 1.72483 | 0.71 |
62DAP/57DAP | 0.98825 | 1 |
68DAP/62DAP | 1.04502 | 0.944 |
68DAP/14DAP | 1.04492 | 0.656 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.27568 | 0.081 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.79251 | |
Mature Green Tomato/Ripe Tomato | 0.45017 | 0.042 |
Immature Eggplant/Mature Eggplant | 0.94055 | |
Ripe Pepper/Ripe Tomato | 0.45461 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.40516 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.37564 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.60042 | |
4-3/M82 | 1.96495 | |
5-3/M82 | 0.62538 | 0.49 |
6-2/M82 | 1.30226 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.65988 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.2256 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88252 | 0.247 |
IL2-6/WTpooled | 1.07464 | 0.659 |
IL7-5/WTpooled | 1.6333 | 0.792 |
IL7-3/WTpooled | 0.95041 | 1 |
IL12-4/WTpooled | 1.0198 | 1 |
IL1-4/WTpooled | 0.99737 | 1 |
WT/WTpooled | 1.0505 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05435 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.89079 | |
DC3000/delta hrp 6h | 1.73569 | 0.857 |
DC3000/delta hrp 12h | 0.93558 | 1 |
DC3000/delta hrp 24h | 1.1089 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.08868 | 0.55 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.91407 | 0.82 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.094 | 1 |
Var 0h | 0.73849 | 1 |
Var 12h I row2-row1 | 1.12997 | 0.613 |
Var 12h NI row2-row1 | 0.94264 | 0.906 |
Var 36h I row2-row1 | 1.0195 | 1 |
Var 36h NI row2-row1 | 1.32057 | 1 |
Var 60h I row2-row1 | 0.92841 | 0.292 |
Var 60h NI row2-row1 | 0.97691 | 1 |
Time course 0hI-0hNI | 0.86969 | 0.13 |
Time course 12hI-12hNI | 0.96384 | 0.526 |
Time course 36hI-36hNI | 0.94523 | 0.215 |
Time course 60hI-60hNI | 0.64253 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.77411 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.67721 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.11048 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00616 | 0.854 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.08294 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08104 | 0.307 |
Manapal/WT (break) | 0.74854 | 1 |
Manapal/WT (red) | N/A | N/A |
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