Expression of 1-1-2.1.6.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.079090.183
27DAP/17DAP1.346110.801
39DAP/27DAP1.118770.82
41DAP/39DAP1.376580.293
42DAP/41DAP1.337730.619
43DAP/42DAP1.34850.595
47DAP/43DAP1.238660.618
52DAP/47DAP0.733910.362
57DAP/52DAP1.34320.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.049070.207
17DAP/reference0.996610.904
27DAP/reference0.98110.595
39DAP/reference1.066450.504
41DAP/reference1.046950.451
42DAP/reference0.956440.081
43DAP/reference0.999830.942
47DAP/reference1.008240.937
52DAP/reference0.990870.654
57DAP/reference0.940980.106

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.232740.046
27DAP/17DAP1.012690.98
39DAP/27DAP1.078770.623
41DAP/39DAP0.983430.986
42DAP/41DAP1.086830.872
43DAP/42DAP0.968620.538
47DAP/43DAP0.958960.722
52DAP/47DAP1.047410.835
57DAP/52DAP0.749170.102
57DAP/7DAP0.876631

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.456960.044
17DAP/reference1.224280.084
27DAP/reference0.940610.325
39DAP/reference0.916620.23
41DAP/reference1.234340.171
42DAP/reference1.220840.308
43DAP/reference1.130950.124
47DAP/reference1.164350.854
52DAP/reference1.234870.058
57DAP/reference1.136040.198

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.034860.41
17DAP/reference1.009040.904
27DAP/reference0.958040.249
39DAP/reference0.908490.274
41DAP/reference0.979780.545
42DAP/reference0.96210.289
43DAP/reference0.983740.657
47DAP/reference0.921770.024
52DAP/reference1.000490.761
57DAP/reference1.048110.593

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.161320.444
17DAP/reference1.065170.706
27DAP/reference0.971040.657
39DAP/reference1.18290.353
41DAP/reference1.06560.939
42DAP/reference1.032660.979
43DAP/reference1.075380.531
47DAP/reference0.960310.306
52DAP/reference1.265680.335
57DAP/reference0.843060.042

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.967241
26DAP/20DAP0.98551
34DAP/26DAP0.946710.961
51DAP/34DAP1.50260.445
52DAP/51DAP0.894781
53DAP/52DAP0.970780.862
55DAP/53DAP0.887860.43
57DAP/55DAP1.724830.71
62DAP/57DAP0.988251
68DAP/62DAP1.045020.944
68DAP/14DAP1.044920.656

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.275680.081

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.79251
Mature Green Tomato/Ripe Tomato0.450170.042
Immature Eggplant/Mature Eggplant0.94055
Ripe Pepper/Ripe Tomato0.454610.293
Mature Eggplant/Ripe Tomato0.40516

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.37564
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.60042
4-3/M821.96495
5-3/M820.625380.49
6-2/M821.30226
6-3/M82N/AN/A
7-1/M821.65988
7-2/M82N/AN/A
9-3-2/M821.22561

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.882520.247
IL2-6/WTpooled1.074640.659
IL7-5/WTpooled1.63330.792
IL7-3/WTpooled0.950411
IL12-4/WTpooled1.01981
IL1-4/WTpooled0.997371
WT/WTpooled1.05051

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.054351

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.89079
DC3000/delta hrp 6h1.735690.857
DC3000/delta hrp 12h0.935581
DC3000/delta hrp 24h1.10890.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.088680.55

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.914070.82
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.0941
Var 0h0.738491
Var 12h I row2-row11.129970.613
Var 12h NI row2-row10.942640.906
Var 36h I row2-row11.01951
Var 36h NI row2-row11.320571
Var 60h I row2-row10.928410.292
Var 60h NI row2-row10.976911
Time course 0hI-0hNI0.869690.13
Time course 12hI-12hNI0.963840.526
Time course 36hI-36hNI0.945230.215
Time course 60hI-60hNI0.642530.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.774110.362
transgenic ySAMdc/azygous control (breaker)1.677210.166
transgenic ySAMdc/azygous control (red)1.110481

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.006160.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.082941

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.081040.307
Manapal/WT (break)0.748541
Manapal/WT (red)N/AN/A