Expression of 1-1-2.1.6.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.84010.206
27DAP/17DAP1.011180.926
39DAP/27DAP0.930940.62
41DAP/39DAP1.212320.326
42DAP/41DAP1.118640.941
43DAP/42DAP0.987110.934
47DAP/43DAP0.939340.76
52DAP/47DAP1.165650.715
57DAP/52DAP0.882780.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.929360.277
17DAP/reference0.997491
27DAP/reference0.986570.694
39DAP/reference0.983370.816
41DAP/reference0.881370.434
42DAP/reference0.871730.004
43DAP/reference1.029820.471
47DAP/reference0.920770.106
52DAP/reference0.924120.202
57DAP/reference1.061040.22

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.977580.732
27DAP/17DAP1.136360.527
39DAP/27DAP0.983020.898
41DAP/39DAP1.112990.497
42DAP/41DAP1.073860.415
43DAP/42DAP1.079180.446
47DAP/43DAP1.002931
52DAP/47DAP0.870060.3
57DAP/52DAP0.886820.426
57DAP/7DAP1.120841

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.173190.511
17DAP/reference1.111480.199
27DAP/reference1.309120.015
39DAP/reference1.251350.036
41DAP/reference1.21320.223
42DAP/reference1.283920.059
43DAP/reference1.162430.008
47DAP/reference0.99681
52DAP/reference1.467030.048
57DAP/reference1.213840.094

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.011570.852
17DAP/reference0.945360.279
27DAP/reference0.926210.155
39DAP/reference0.992190.603
41DAP/reference0.997590.683
42DAP/reference0.973860.534
43DAP/reference0.967620.552
47DAP/reference0.868010.01
52DAP/reference1.04240.667
57DAP/reference1.071090.508

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.150960.433
17DAP/reference1.014960.9
27DAP/reference0.993450.727
39DAP/reference1.1280.189
41DAP/reference1.12550.439
42DAP/reference1.241940.175
43DAP/reference1.085030.599
47DAP/reference0.898960.089
52DAP/reference0.929460.472
57DAP/reference0.756870.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.014470.966
26DAP/20DAP1.02961
34DAP/26DAP1.015341
51DAP/34DAP1.062690.775
52DAP/51DAP1.139390.534
53DAP/52DAP0.843460.138
55DAP/53DAP1.183770.519
57DAP/55DAP1.283330.793
62DAP/57DAP0.96260.871
68DAP/62DAP1.177480.455
68DAP/14DAP1.044330.826

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.783620.028

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.682270.204
Mature Green Tomato/Ripe Tomato0.908830.411
Immature Eggplant/Mature Eggplant1.093190.528
Ripe Pepper/Ripe Tomato0.68987
Mature Eggplant/Ripe Tomato2.191840.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.024531
1-1-2/M821.003261
12-2/M821.132691
12-4/M820.951991
1-3/M820.853171
2-1-1/M821.09005
2-1/M82N/AN/A
2-6/M821.107330.405
3-2/M820.99624
4-1-1/M820.946031
4-1/M821.12330.853
4-3-2/M820.929421
4-3/M821.166911
5-3/M820.966151
6-2/M82N/AN/A
6-3/M820.97954
7-1/M820.958621
7-2/M821.115190.385
9-3-2/M820.92316

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.02380.493
IL2-6/WTpooled1.209310.419
IL7-5/WTpooled0.92611
IL7-3/WTpooled0.91730.418
IL12-4/WTpooled0.972481
IL1-4/WTpooled0.967580.834
WT/WTpooled0.983111

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.013361

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.992691
DC3000/delta hrp 6h1.032820.95
DC3000/delta hrp 12h0.948641
DC3000/delta hrp 24h0.923880.257

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.923710.196
DC3000 delta B/DC3000 delta AB1.177320.318

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.994551
Var 0h0.947091
Var 12h I row2-row11.002331
Var 12h NI row2-row11.082671
Var 36h I row2-row11.101020.742
Var 36h NI row2-row11.191021
Var 60h I row2-row10.984031
Var 60h NI row2-row10.857620.297
Time course 0hI-0hNI0.898320.07
Time course 12hI-12hNI1.024480.777
Time course 36hI-36hNI1.195990.08
Time course 60hI-60hNI1.333210.029

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.034680.699
transgenic ySAMdc/azygous control (breaker)1.336561
transgenic ySAMdc/azygous control (red)1.229770.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.984350.534

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.279290.084
Manapal/WT (break)1.12751
Manapal/WT (red)1.312140.164