Expression of 1-1-2.1.6.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8401 | 0.206 |
27DAP/17DAP | 1.01118 | 0.926 |
39DAP/27DAP | 0.93094 | 0.62 |
41DAP/39DAP | 1.21232 | 0.326 |
42DAP/41DAP | 1.11864 | 0.941 |
43DAP/42DAP | 0.98711 | 0.934 |
47DAP/43DAP | 0.93934 | 0.76 |
52DAP/47DAP | 1.16565 | 0.715 |
57DAP/52DAP | 0.88278 | 0.784 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92936 | 0.277 |
17DAP/reference | 0.99749 | 1 |
27DAP/reference | 0.98657 | 0.694 |
39DAP/reference | 0.98337 | 0.816 |
41DAP/reference | 0.88137 | 0.434 |
42DAP/reference | 0.87173 | 0.004 |
43DAP/reference | 1.02982 | 0.471 |
47DAP/reference | 0.92077 | 0.106 |
52DAP/reference | 0.92412 | 0.202 |
57DAP/reference | 1.06104 | 0.22 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97758 | 0.732 |
27DAP/17DAP | 1.13636 | 0.527 |
39DAP/27DAP | 0.98302 | 0.898 |
41DAP/39DAP | 1.11299 | 0.497 |
42DAP/41DAP | 1.07386 | 0.415 |
43DAP/42DAP | 1.07918 | 0.446 |
47DAP/43DAP | 1.00293 | 1 |
52DAP/47DAP | 0.87006 | 0.3 |
57DAP/52DAP | 0.88682 | 0.426 |
57DAP/7DAP | 1.12084 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17319 | 0.511 |
17DAP/reference | 1.11148 | 0.199 |
27DAP/reference | 1.30912 | 0.015 |
39DAP/reference | 1.25135 | 0.036 |
41DAP/reference | 1.2132 | 0.223 |
42DAP/reference | 1.28392 | 0.059 |
43DAP/reference | 1.16243 | 0.008 |
47DAP/reference | 0.9968 | 1 |
52DAP/reference | 1.46703 | 0.048 |
57DAP/reference | 1.21384 | 0.094 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01157 | 0.852 |
17DAP/reference | 0.94536 | 0.279 |
27DAP/reference | 0.92621 | 0.155 |
39DAP/reference | 0.99219 | 0.603 |
41DAP/reference | 0.99759 | 0.683 |
42DAP/reference | 0.97386 | 0.534 |
43DAP/reference | 0.96762 | 0.552 |
47DAP/reference | 0.86801 | 0.01 |
52DAP/reference | 1.0424 | 0.667 |
57DAP/reference | 1.07109 | 0.508 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15096 | 0.433 |
17DAP/reference | 1.01496 | 0.9 |
27DAP/reference | 0.99345 | 0.727 |
39DAP/reference | 1.128 | 0.189 |
41DAP/reference | 1.1255 | 0.439 |
42DAP/reference | 1.24194 | 0.175 |
43DAP/reference | 1.08503 | 0.599 |
47DAP/reference | 0.89896 | 0.089 |
52DAP/reference | 0.92946 | 0.472 |
57DAP/reference | 0.75687 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01447 | 0.966 |
26DAP/20DAP | 1.0296 | 1 |
34DAP/26DAP | 1.01534 | 1 |
51DAP/34DAP | 1.06269 | 0.775 |
52DAP/51DAP | 1.13939 | 0.534 |
53DAP/52DAP | 0.84346 | 0.138 |
55DAP/53DAP | 1.18377 | 0.519 |
57DAP/55DAP | 1.28333 | 0.793 |
62DAP/57DAP | 0.9626 | 0.871 |
68DAP/62DAP | 1.17748 | 0.455 |
68DAP/14DAP | 1.04433 | 0.826 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.78362 | 0.028 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.68227 | 0.204 |
Mature Green Tomato/Ripe Tomato | 0.90883 | 0.411 |
Immature Eggplant/Mature Eggplant | 1.09319 | 0.528 |
Ripe Pepper/Ripe Tomato | 0.68987 | |
Mature Eggplant/Ripe Tomato | 2.19184 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02453 | 1 |
1-1-2/M82 | 1.00326 | 1 |
12-2/M82 | 1.13269 | 1 |
12-4/M82 | 0.95199 | 1 |
1-3/M82 | 0.85317 | 1 |
2-1-1/M82 | 1.09005 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.10733 | 0.405 |
3-2/M82 | 0.99624 | |
4-1-1/M82 | 0.94603 | 1 |
4-1/M82 | 1.1233 | 0.853 |
4-3-2/M82 | 0.92942 | 1 |
4-3/M82 | 1.16691 | 1 |
5-3/M82 | 0.96615 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.97954 | |
7-1/M82 | 0.95862 | 1 |
7-2/M82 | 1.11519 | 0.385 |
9-3-2/M82 | 0.92316 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0238 | 0.493 |
IL2-6/WTpooled | 1.20931 | 0.419 |
IL7-5/WTpooled | 0.9261 | 1 |
IL7-3/WTpooled | 0.9173 | 0.418 |
IL12-4/WTpooled | 0.97248 | 1 |
IL1-4/WTpooled | 0.96758 | 0.834 |
WT/WTpooled | 0.98311 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01336 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99269 | 1 |
DC3000/delta hrp 6h | 1.03282 | 0.95 |
DC3000/delta hrp 12h | 0.94864 | 1 |
DC3000/delta hrp 24h | 0.92388 | 0.257 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.92371 | 0.196 |
DC3000 delta B/DC3000 delta AB | 1.17732 | 0.318 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99455 | 1 |
Var 0h | 0.94709 | 1 |
Var 12h I row2-row1 | 1.00233 | 1 |
Var 12h NI row2-row1 | 1.08267 | 1 |
Var 36h I row2-row1 | 1.10102 | 0.742 |
Var 36h NI row2-row1 | 1.19102 | 1 |
Var 60h I row2-row1 | 0.98403 | 1 |
Var 60h NI row2-row1 | 0.85762 | 0.297 |
Time course 0hI-0hNI | 0.89832 | 0.07 |
Time course 12hI-12hNI | 1.02448 | 0.777 |
Time course 36hI-36hNI | 1.19599 | 0.08 |
Time course 60hI-60hNI | 1.33321 | 0.029 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03468 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 1.33656 | 1 |
transgenic ySAMdc/azygous control (red) | 1.22977 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98435 | 0.534 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.27929 | 0.084 |
Manapal/WT (break) | 1.1275 | 1 |
Manapal/WT (red) | 1.31214 | 0.164 |
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