Expression of 1-1-2.1.7.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15089 | 0.77 |
27DAP/17DAP | 0.77594 | 0.438 |
39DAP/27DAP | 0.88748 | 0.641 |
41DAP/39DAP | 0.79748 | 0.43 |
42DAP/41DAP | 0.96763 | 1 |
43DAP/42DAP | 1.21183 | 1 |
47DAP/43DAP | 0.87433 | 0.584 |
52DAP/47DAP | 1.31449 | 0.869 |
57DAP/52DAP | 1.63688 | 0.427 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02677 | 0.9 |
17DAP/reference | 0.78588 | 0.007 |
27DAP/reference | 0.93682 | 0.444 |
39DAP/reference | 0.83076 | 0.039 |
41DAP/reference | 0.80733 | 0.016 |
42DAP/reference | 1.06821 | 0.084 |
43DAP/reference | 0.98623 | 0.785 |
47DAP/reference | 1.15614 | 0.003 |
52DAP/reference | 1.00955 | 0.768 |
57DAP/reference | 1.19844 | 0.02 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21093 | 0.372 |
27DAP/17DAP | 0.81965 | 0.39 |
39DAP/27DAP | 0.719 | 0.047 |
41DAP/39DAP | 1.21659 | 0.484 |
42DAP/41DAP | 0.88619 | 0.368 |
43DAP/42DAP | 0.97921 | 0.801 |
47DAP/43DAP | 1.11654 | 0.765 |
52DAP/47DAP | 0.98163 | 0.905 |
57DAP/52DAP | 1.18574 | 0.523 |
57DAP/7DAP | 1.31623 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17721 | 0.452 |
17DAP/reference | 1.06507 | 0.971 |
27DAP/reference | 0.8539 | 0.159 |
39DAP/reference | 0.87328 | 0.095 |
41DAP/reference | 0.82126 | 0.086 |
42DAP/reference | 0.80542 | 0.029 |
43DAP/reference | 0.96271 | 0.44 |
47DAP/reference | 1.07116 | 0.685 |
52DAP/reference | 0.93128 | 0.254 |
57DAP/reference | 0.92611 | 0.215 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04673 | 0.732 |
17DAP/reference | 1.14488 | 0.012 |
27DAP/reference | 1.15354 | 0.203 |
39DAP/reference | 1.17498 | 0.3 |
41DAP/reference | 1.07091 | 0.878 |
42DAP/reference | 1.26322 | 0.053 |
43DAP/reference | 0.83704 | 0.175 |
47DAP/reference | 1.12128 | 0.12 |
52DAP/reference | 0.93866 | 0.203 |
57DAP/reference | 0.82323 | 0.063 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01947 | 0.804 |
17DAP/reference | 1.05192 | 0.627 |
27DAP/reference | 1.11432 | 0.078 |
39DAP/reference | 1.01344 | 0.935 |
41DAP/reference | 0.89217 | 0.264 |
42DAP/reference | 1.04149 | 0.994 |
43DAP/reference | 1.37926 | 0.134 |
47DAP/reference | 1.02518 | 1 |
52DAP/reference | 1.23766 | 0.262 |
57DAP/reference | 1.74836 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.39839 | 0.586 |
26DAP/20DAP | 2.02012 | 0.099 |
34DAP/26DAP | 0.69273 | 0.584 |
51DAP/34DAP | 1.74077 | 0.058 |
52DAP/51DAP | 1.11056 | 0.776 |
53DAP/52DAP | 0.84858 | 0.663 |
55DAP/53DAP | 0.70755 | 0.12 |
57DAP/55DAP | 1.02461 | 0.904 |
62DAP/57DAP | 0.70065 | 0.466 |
68DAP/62DAP | 1.42426 | 0.398 |
68DAP/14DAP | 1.01689 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.77594 | 0.211 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.21457 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.26206 | 0.077 |
Immature Eggplant/Mature Eggplant | 1.06497 | 0.321 |
Ripe Pepper/Ripe Tomato | 1.75588 | 1 |
Mature Eggplant/Ripe Tomato | 1.47163 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.64003 | |
1-1-2/M82 | 1.03244 | 1 |
12-2/M82 | 0.56951 | |
12-4/M82 | 0.84583 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.01468 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.07665 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.20541 | 1 |
5-3/M82 | 1.17306 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.9891 | |
7-1/M82 | 1.34665 | |
7-2/M82 | 1.14318 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.14826 | 0.277 |
IL2-6/WTpooled | 1.58371 | 0.395 |
IL7-5/WTpooled | 1.11728 | 0.67 |
IL7-3/WTpooled | 0.97659 | 1 |
IL12-4/WTpooled | 1.01646 | 1 |
IL1-4/WTpooled | 1.02341 | 1 |
WT/WTpooled | 0.95045 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04954 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08932 | 0.921 |
DC3000/delta hrp 6h | 0.99351 | 0.95 |
DC3000/delta hrp 12h | 0.93817 | 1 |
DC3000/delta hrp 24h | 0.81262 | 0.082 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.86186 | 0.085 |
DC3000 delta B/DC3000 delta AB | 0.86613 | 0.253 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95875 | 1 |
Exp 36h | 0.95657 | 0.879 |
Exp 60h | 0.87698 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04557 | |
Var 0h | 1.3193 | 0.305 |
Var 12h I row2-row1 | 1.49494 | 0.196 |
Var 12h NI row2-row1 | 1.27018 | |
Var 36h I row2-row1 | 1.17738 | 0.908 |
Var 36h NI row2-row1 | 2.79156 | 1 |
Var 60h I row2-row1 | 0.80853 | |
Var 60h NI row2-row1 | 1.02098 | 1 |
Time course 0hI-0hNI | 0.87022 | 0.216 |
Time course 12hI-12hNI | 0.92656 | 0.402 |
Time course 36hI-36hNI | 0.89217 | 0.153 |
Time course 60hI-60hNI | 0.87478 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07357 | 0.372 |
transgenic ySAMdc/azygous control (breaker) | 1.27011 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.05245 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.43129 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.03584 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83663 | 0.172 |
Manapal/WT (break) | 0.88102 | 1 |
Manapal/WT (red) | 1.13807 | 1 |
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