Expression of 1-1-2.1.7.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.150890.77
27DAP/17DAP0.775940.438
39DAP/27DAP0.887480.641
41DAP/39DAP0.797480.43
42DAP/41DAP0.967631
43DAP/42DAP1.211831
47DAP/43DAP0.874330.584
52DAP/47DAP1.314490.869
57DAP/52DAP1.636880.427

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.026770.9
17DAP/reference0.785880.007
27DAP/reference0.936820.444
39DAP/reference0.830760.039
41DAP/reference0.807330.016
42DAP/reference1.068210.084
43DAP/reference0.986230.785
47DAP/reference1.156140.003
52DAP/reference1.009550.768
57DAP/reference1.198440.02

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.210930.372
27DAP/17DAP0.819650.39
39DAP/27DAP0.7190.047
41DAP/39DAP1.216590.484
42DAP/41DAP0.886190.368
43DAP/42DAP0.979210.801
47DAP/43DAP1.116540.765
52DAP/47DAP0.981630.905
57DAP/52DAP1.185740.523
57DAP/7DAP1.316231

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.177210.452
17DAP/reference1.065070.971
27DAP/reference0.85390.159
39DAP/reference0.873280.095
41DAP/reference0.821260.086
42DAP/reference0.805420.029
43DAP/reference0.962710.44
47DAP/reference1.071160.685
52DAP/reference0.931280.254
57DAP/reference0.926110.215

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.046730.732
17DAP/reference1.144880.012
27DAP/reference1.153540.203
39DAP/reference1.174980.3
41DAP/reference1.070910.878
42DAP/reference1.263220.053
43DAP/reference0.837040.175
47DAP/reference1.121280.12
52DAP/reference0.938660.203
57DAP/reference0.823230.063

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.019470.804
17DAP/reference1.051920.627
27DAP/reference1.114320.078
39DAP/reference1.013440.935
41DAP/reference0.892170.264
42DAP/reference1.041490.994
43DAP/reference1.379260.134
47DAP/reference1.025181
52DAP/reference1.237660.262
57DAP/reference1.748360.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.398390.586
26DAP/20DAP2.020120.099
34DAP/26DAP0.692730.584
51DAP/34DAP1.740770.058
52DAP/51DAP1.110560.776
53DAP/52DAP0.848580.663
55DAP/53DAP0.707550.12
57DAP/55DAP1.024610.904
62DAP/57DAP0.700650.466
68DAP/62DAP1.424260.398
68DAP/14DAP1.01689

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.775940.211

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.214570.058
Mature Green Tomato/Ripe Tomato1.262060.077
Immature Eggplant/Mature Eggplant1.064970.321
Ripe Pepper/Ripe Tomato1.755881
Mature Eggplant/Ripe Tomato1.471631

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.64003
1-1-2/M821.032441
12-2/M820.56951
12-4/M820.845831
1-3/M82N/AN/A
2-1-1/M821.01468
2-1/M82N/AN/A
2-6/M821.076651
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.205411
5-3/M821.173061
6-2/M82N/AN/A
6-3/M820.9891
7-1/M821.34665
7-2/M821.143181
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.148260.277
IL2-6/WTpooled1.583710.395
IL7-5/WTpooled1.117280.67
IL7-3/WTpooled0.976591
IL12-4/WTpooled1.016461
IL1-4/WTpooled1.023411
WT/WTpooled0.950451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.049540.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.089320.921
DC3000/delta hrp 6h0.993510.95
DC3000/delta hrp 12h0.938171
DC3000/delta hrp 24h0.812620.082

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.861860.085
DC3000 delta B/DC3000 delta AB0.866130.253

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.958751
Exp 36h0.956570.879
Exp 60h0.876980.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.04557
Var 0h1.31930.305
Var 12h I row2-row11.494940.196
Var 12h NI row2-row11.27018
Var 36h I row2-row11.177380.908
Var 36h NI row2-row12.791561
Var 60h I row2-row10.80853
Var 60h NI row2-row11.020981
Time course 0hI-0hNI0.870220.216
Time course 12hI-12hNI0.926560.402
Time course 36hI-36hNI0.892170.153
Time course 60hI-60hNI0.874780.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.073570.372
transgenic ySAMdc/azygous control (breaker)1.270110.248
transgenic ySAMdc/azygous control (red)1.052450.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.431290.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.035841

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.836630.172
Manapal/WT (break)0.881021
Manapal/WT (red)1.138071