Expression of 1-1-2.1.7.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.089 | 0.863 |
27DAP/17DAP | 2.1707 | 0.087 |
39DAP/27DAP | 1.92897 | 0.163 |
41DAP/39DAP | 0.6677 | 0.101 |
42DAP/41DAP | 0.74046 | 0.397 |
43DAP/42DAP | 0.93828 | 0.858 |
47DAP/43DAP | 0.74211 | 0.221 |
52DAP/47DAP | 1.48016 | 0.538 |
57DAP/52DAP | 1.61901 | 0.605 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92551 | 0.128 |
17DAP/reference | 1.05542 | 0.427 |
27DAP/reference | 1.06251 | 0.684 |
39DAP/reference | 1.05071 | 0.465 |
41DAP/reference | 1.12544 | 0.312 |
42DAP/reference | 1.01433 | 0.755 |
43DAP/reference | 1.09334 | 0.175 |
47DAP/reference | 1.02391 | 1 |
52DAP/reference | 0.91344 | 0.183 |
57DAP/reference | 0.83307 | 0.071 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.74192 | 0.112 |
27DAP/17DAP | 1.32882 | 0.411 |
39DAP/27DAP | 1.47695 | 0.151 |
41DAP/39DAP | 1.93728 | 0.009 |
42DAP/41DAP | 0.71733 | 0.017 |
43DAP/42DAP | 0.57925 | 0.022 |
47DAP/43DAP | 1.40001 | 0.071 |
52DAP/47DAP | 0.64937 | 0.096 |
57DAP/52DAP | 0.89405 | 0.555 |
57DAP/7DAP | 1.02393 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47737 | 0.039 |
17DAP/reference | 1.18469 | 0.269 |
27DAP/reference | 1.08616 | 0.664 |
39DAP/reference | 1.0342 | 0.779 |
41DAP/reference | 0.98876 | 0.619 |
42DAP/reference | 0.98774 | 0.582 |
43DAP/reference | 0.90637 | 0.334 |
47DAP/reference | 1.26569 | 0.044 |
52DAP/reference | 1.18248 | 0.052 |
57DAP/reference | 1.21774 | 0.023 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10165 | 0.65 |
17DAP/reference | 1.26458 | 0.043 |
27DAP/reference | 1.26046 | 0.075 |
39DAP/reference | 1.08839 | 0.769 |
41DAP/reference | 0.99205 | 0.557 |
42DAP/reference | 1.04784 | 1 |
43DAP/reference | 1.41104 | 0.112 |
47DAP/reference | 1.05496 | 0.89 |
52DAP/reference | 1.01926 | 1 |
57DAP/reference | 1.2645 | 0.029 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0553 | 0.903 |
17DAP/reference | 0.95948 | 0.444 |
27DAP/reference | 0.85938 | 0.067 |
39DAP/reference | 1.05066 | 0.65 |
41DAP/reference | 1.5661 | 0.369 |
42DAP/reference | 0.94558 | 0.552 |
43DAP/reference | 1.02674 | 0.894 |
47DAP/reference | 0.92056 | 0.231 |
52DAP/reference | 1.31648 | 0.205 |
57DAP/reference | 1.11904 | 0.311 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.89132 | 1 |
26DAP/20DAP | 1.30413 | 0.806 |
34DAP/26DAP | 1.13667 | 1 |
51DAP/34DAP | 0.97614 | 0.807 |
52DAP/51DAP | 0.83054 | 1 |
53DAP/52DAP | 0.91408 | 0.767 |
55DAP/53DAP | 0.51373 | 0.017 |
57DAP/55DAP | 1.86241 | 0.242 |
62DAP/57DAP | 1.30939 | 0.569 |
68DAP/62DAP | 0.81019 | 0.152 |
68DAP/14DAP | 1.09861 | 0.936 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87617 | 0.087 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.92501 | 0.527 |
Mature Green Tomato/Ripe Tomato | 1.33208 | 0.363 |
Immature Eggplant/Mature Eggplant | 1.07192 | 0.311 |
Ripe Pepper/Ripe Tomato | 1.43613 | 0.256 |
Mature Eggplant/Ripe Tomato | 0.96693 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 2.31079 | |
1-1-2/M82 | 0.32949 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.48314 | |
1-3/M82 | 2.90186 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 3.60262 | 0.467 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.90124 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.46022 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.36588 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97137 | 1 |
DC3000/delta hrp 6h | 0.97778 | 0.95 |
DC3000/delta hrp 12h | 1.13488 | 1 |
DC3000/delta hrp 24h | 0.97488 | 0.818 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.66103 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.19154 | 0.363 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.21245 | |
Var 12h I row2-row1 | 0.82702 | 0.338 |
Var 12h NI row2-row1 | 1.21335 | 0.649 |
Var 36h I row2-row1 | 1.11055 | 1 |
Var 36h NI row2-row1 | 0.77663 | 0.469 |
Var 60h I row2-row1 | 0.86434 | 0.439 |
Var 60h NI row2-row1 | 0.79421 | 0.69 |
Time course 0hI-0hNI | 1.02691 | 0.867 |
Time course 12hI-12hNI | 1.04202 | 0.678 |
Time course 36hI-36hNI | 1.53165 | 0.005 |
Time course 60hI-60hNI | 2.45807 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.66487 | 0.237 |
transgenic ySAMdc/azygous control (breaker) | 1.3395 | 1 |
transgenic ySAMdc/azygous control (red) | 1.56202 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.46211 | 0.08 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.75447 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.16082 | 0.307 |
Manapal/WT (break) | 2.17701 | 0.381 |
Manapal/WT (red) | 2.0645 | 0.222 |
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