Expression of 1-1-2.1.7.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.0890.863
27DAP/17DAP2.17070.087
39DAP/27DAP1.928970.163
41DAP/39DAP0.66770.101
42DAP/41DAP0.740460.397
43DAP/42DAP0.938280.858
47DAP/43DAP0.742110.221
52DAP/47DAP1.480160.538
57DAP/52DAP1.619010.605

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.925510.128
17DAP/reference1.055420.427
27DAP/reference1.062510.684
39DAP/reference1.050710.465
41DAP/reference1.125440.312
42DAP/reference1.014330.755
43DAP/reference1.093340.175
47DAP/reference1.023911
52DAP/reference0.913440.183
57DAP/reference0.833070.071

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.741920.112
27DAP/17DAP1.328820.411
39DAP/27DAP1.476950.151
41DAP/39DAP1.937280.009
42DAP/41DAP0.717330.017
43DAP/42DAP0.579250.022
47DAP/43DAP1.400010.071
52DAP/47DAP0.649370.096
57DAP/52DAP0.894050.555
57DAP/7DAP1.02393

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.477370.039
17DAP/reference1.184690.269
27DAP/reference1.086160.664
39DAP/reference1.03420.779
41DAP/reference0.988760.619
42DAP/reference0.987740.582
43DAP/reference0.906370.334
47DAP/reference1.265690.044
52DAP/reference1.182480.052
57DAP/reference1.217740.023

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.101650.65
17DAP/reference1.264580.043
27DAP/reference1.260460.075
39DAP/reference1.088390.769
41DAP/reference0.992050.557
42DAP/reference1.047841
43DAP/reference1.411040.112
47DAP/reference1.054960.89
52DAP/reference1.019261
57DAP/reference1.26450.029

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.05530.903
17DAP/reference0.959480.444
27DAP/reference0.859380.067
39DAP/reference1.050660.65
41DAP/reference1.56610.369
42DAP/reference0.945580.552
43DAP/reference1.026740.894
47DAP/reference0.920560.231
52DAP/reference1.316480.205
57DAP/reference1.119040.311

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.891321
26DAP/20DAP1.304130.806
34DAP/26DAP1.136671
51DAP/34DAP0.976140.807
52DAP/51DAP0.830541
53DAP/52DAP0.914080.767
55DAP/53DAP0.513730.017
57DAP/55DAP1.862410.242
62DAP/57DAP1.309390.569
68DAP/62DAP0.810190.152
68DAP/14DAP1.098610.936

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.876170.087

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.925010.527
Mature Green Tomato/Ripe Tomato1.332080.363
Immature Eggplant/Mature Eggplant1.071920.311
Ripe Pepper/Ripe Tomato1.436130.256
Mature Eggplant/Ripe Tomato0.966931

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M822.31079
1-1-2/M820.32949
12-2/M82N/AN/A
12-4/M820.48314
1-3/M822.90186
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M823.602620.467
6-2/M82N/AN/A
6-3/M820.901241
7-1/M82N/AN/A
7-2/M821.46022
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.365880.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.971371
DC3000/delta hrp 6h0.977780.95
DC3000/delta hrp 12h1.134881
DC3000/delta hrp 24h0.974880.818

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.661030.333
DC3000 delta B/DC3000 delta AB1.191540.363

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.21245
Var 12h I row2-row10.827020.338
Var 12h NI row2-row11.213350.649
Var 36h I row2-row11.110551
Var 36h NI row2-row10.776630.469
Var 60h I row2-row10.864340.439
Var 60h NI row2-row10.794210.69
Time course 0hI-0hNI1.026910.867
Time course 12hI-12hNI1.042020.678
Time course 36hI-36hNI1.531650.005
Time course 60hI-60hNI2.458070.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.664870.237
transgenic ySAMdc/azygous control (breaker)1.33951
transgenic ySAMdc/azygous control (red)1.562020.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.462110.08

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.754470.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.160820.307
Manapal/WT (break)2.177010.381
Manapal/WT (red)2.06450.222