Expression of 1-1-2.1.7.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.026960.947
27DAP/17DAP1.091570.881
39DAP/27DAP0.788970.325
41DAP/39DAP1.311370.473
42DAP/41DAP0.921641
43DAP/42DAP1.105340.956
47DAP/43DAP1.067510.609
52DAP/47DAP1.18080.776
57DAP/52DAP1.0210.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.920170.277
17DAP/reference1.15360.112
27DAP/reference0.96660.567
39DAP/reference1.101350.343
41DAP/reference1.142370.133
42DAP/reference0.899820.069
43DAP/reference1.036610.73
47DAP/reference0.992910.568
52DAP/reference1.075510.43
57DAP/reference1.095420.447

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.985820.732
27DAP/17DAP1.009420.98
39DAP/27DAP1.011520.793
41DAP/39DAP1.048330.727
42DAP/41DAP1.019060.836
43DAP/42DAP0.979760.558
47DAP/43DAP0.975980.857
52DAP/47DAP1.04220.819
57DAP/52DAP0.97860.66
57DAP/7DAP1.038950.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.995740.613
17DAP/reference0.968090.064
27DAP/reference0.918020.058
39DAP/reference0.940730.027
41DAP/reference0.972680.489
42DAP/reference0.93270.13
43DAP/reference0.898610.014
47DAP/reference0.909630.222
52DAP/reference0.937560.09
57DAP/reference0.964880.25

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.056230.612
17DAP/reference1.379320.531
27DAP/reference0.855260.155
39DAP/reference1.09921
41DAP/reference1.028530.718
42DAP/reference0.702760.028
43DAP/reference1.116340.447
47DAP/reference0.930180.083
52DAP/reference1.196530.3
57DAP/reference1.227120.131

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.86390.063
17DAP/reference0.949180.268
27DAP/reference0.957390.133
39DAP/reference0.930010.035
41DAP/reference0.958250.055
42DAP/reference0.92420.049
43DAP/reference0.898210.256
47DAP/reference0.883660.315
52DAP/reference0.786630.169
57DAP/reference0.858350.059

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.364180.586
26DAP/20DAP0.971341
34DAP/26DAP1.004361
51DAP/34DAP1.009120.978
52DAP/51DAP1.00590.965
53DAP/52DAP1.047050.768
55DAP/53DAP1.043070.733
57DAP/55DAP1.100650.311
62DAP/57DAP1.106250.767
68DAP/62DAP0.68510.505
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.002350.855

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.68848
Mature Green Tomato/Ripe Tomato0.620360.036
Immature Eggplant/Mature Eggplant0.441950.111
Ripe Pepper/Ripe Tomato0.15227
Mature Eggplant/Ripe Tomato0.256230.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.094360.742
1-1-2/M821.117030.891
12-2/M821.135511
12-4/M821.088590.438
1-3/M821.01241
2-1-1/M821.000691
2-1/M82N/AN/A
2-6/M821.04880.695
3-2/M820.99219
4-1-1/M821.037641
4-1/M821.1141
4-3-2/M821.688370.508
4-3/M821.246441
5-3/M820.897730.642
6-2/M821.002981
6-3/M821.04031
7-1/M821.436611
7-2/M821.08811
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.75398
IL2-6/WTpooled0.522520.348
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.588771
IL12-4/WTpooled1.09641
IL1-4/WTpooled0.908180.834
WT/WTpooled0.913611

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.965321
DC3000/delta hrp 6h5.06022
DC3000/delta hrp 12h0.807191
DC3000/delta hrp 24h1.073010.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.038920.384
DC3000 delta B/DC3000 delta AB1.018820.677

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018831
Var 0h0.261241
Var 12h I row2-row11.17520.209
Var 12h NI row2-row11.08651
Var 36h I row2-row11.063371
Var 36h NI row2-row10.958050.61
Var 60h I row2-row11.335680.562
Var 60h NI row2-row11.012561
Time course 0hI-0hNI1.128070.852
Time course 12hI-12hNI1.096640.682
Time course 36hI-36hNI1.048330.513
Time course 60hI-60hNI1.294140.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.817510.32
transgenic ySAMdc/azygous control (breaker)1.187150.248
transgenic ySAMdc/azygous control (red)0.986631

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.958880.126

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.770270.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.920141
Manapal/WT (red)0.475020.181