Expression of 1-1-2.1.7.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02696 | 0.947 |
27DAP/17DAP | 1.09157 | 0.881 |
39DAP/27DAP | 0.78897 | 0.325 |
41DAP/39DAP | 1.31137 | 0.473 |
42DAP/41DAP | 0.92164 | 1 |
43DAP/42DAP | 1.10534 | 0.956 |
47DAP/43DAP | 1.06751 | 0.609 |
52DAP/47DAP | 1.1808 | 0.776 |
57DAP/52DAP | 1.021 | 0.987 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92017 | 0.277 |
17DAP/reference | 1.1536 | 0.112 |
27DAP/reference | 0.9666 | 0.567 |
39DAP/reference | 1.10135 | 0.343 |
41DAP/reference | 1.14237 | 0.133 |
42DAP/reference | 0.89982 | 0.069 |
43DAP/reference | 1.03661 | 0.73 |
47DAP/reference | 0.99291 | 0.568 |
52DAP/reference | 1.07551 | 0.43 |
57DAP/reference | 1.09542 | 0.447 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98582 | 0.732 |
27DAP/17DAP | 1.00942 | 0.98 |
39DAP/27DAP | 1.01152 | 0.793 |
41DAP/39DAP | 1.04833 | 0.727 |
42DAP/41DAP | 1.01906 | 0.836 |
43DAP/42DAP | 0.97976 | 0.558 |
47DAP/43DAP | 0.97598 | 0.857 |
52DAP/47DAP | 1.0422 | 0.819 |
57DAP/52DAP | 0.9786 | 0.66 |
57DAP/7DAP | 1.03895 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99574 | 0.613 |
17DAP/reference | 0.96809 | 0.064 |
27DAP/reference | 0.91802 | 0.058 |
39DAP/reference | 0.94073 | 0.027 |
41DAP/reference | 0.97268 | 0.489 |
42DAP/reference | 0.9327 | 0.13 |
43DAP/reference | 0.89861 | 0.014 |
47DAP/reference | 0.90963 | 0.222 |
52DAP/reference | 0.93756 | 0.09 |
57DAP/reference | 0.96488 | 0.25 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05623 | 0.612 |
17DAP/reference | 1.37932 | 0.531 |
27DAP/reference | 0.85526 | 0.155 |
39DAP/reference | 1.0992 | 1 |
41DAP/reference | 1.02853 | 0.718 |
42DAP/reference | 0.70276 | 0.028 |
43DAP/reference | 1.11634 | 0.447 |
47DAP/reference | 0.93018 | 0.083 |
52DAP/reference | 1.19653 | 0.3 |
57DAP/reference | 1.22712 | 0.131 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8639 | 0.063 |
17DAP/reference | 0.94918 | 0.268 |
27DAP/reference | 0.95739 | 0.133 |
39DAP/reference | 0.93001 | 0.035 |
41DAP/reference | 0.95825 | 0.055 |
42DAP/reference | 0.9242 | 0.049 |
43DAP/reference | 0.89821 | 0.256 |
47DAP/reference | 0.88366 | 0.315 |
52DAP/reference | 0.78663 | 0.169 |
57DAP/reference | 0.85835 | 0.059 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.36418 | 0.586 |
26DAP/20DAP | 0.97134 | 1 |
34DAP/26DAP | 1.00436 | 1 |
51DAP/34DAP | 1.00912 | 0.978 |
52DAP/51DAP | 1.0059 | 0.965 |
53DAP/52DAP | 1.04705 | 0.768 |
55DAP/53DAP | 1.04307 | 0.733 |
57DAP/55DAP | 1.10065 | 0.311 |
62DAP/57DAP | 1.10625 | 0.767 |
68DAP/62DAP | 0.6851 | 0.505 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.00235 | 0.855 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.68848 | |
Mature Green Tomato/Ripe Tomato | 0.62036 | 0.036 |
Immature Eggplant/Mature Eggplant | 0.44195 | 0.111 |
Ripe Pepper/Ripe Tomato | 0.15227 | |
Mature Eggplant/Ripe Tomato | 0.25623 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09436 | 0.742 |
1-1-2/M82 | 1.11703 | 0.891 |
12-2/M82 | 1.13551 | 1 |
12-4/M82 | 1.08859 | 0.438 |
1-3/M82 | 1.01241 | |
2-1-1/M82 | 1.00069 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.0488 | 0.695 |
3-2/M82 | 0.99219 | |
4-1-1/M82 | 1.03764 | 1 |
4-1/M82 | 1.1141 | |
4-3-2/M82 | 1.68837 | 0.508 |
4-3/M82 | 1.24644 | 1 |
5-3/M82 | 0.89773 | 0.642 |
6-2/M82 | 1.00298 | 1 |
6-3/M82 | 1.04031 | |
7-1/M82 | 1.43661 | 1 |
7-2/M82 | 1.08811 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.75398 | |
IL2-6/WTpooled | 0.52252 | 0.348 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.58877 | 1 |
IL12-4/WTpooled | 1.0964 | 1 |
IL1-4/WTpooled | 0.90818 | 0.834 |
WT/WTpooled | 0.91361 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96532 | 1 |
DC3000/delta hrp 6h | 5.06022 | |
DC3000/delta hrp 12h | 0.80719 | 1 |
DC3000/delta hrp 24h | 1.07301 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.03892 | 0.384 |
DC3000 delta B/DC3000 delta AB | 1.01882 | 0.677 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01883 | 1 |
Var 0h | 0.26124 | 1 |
Var 12h I row2-row1 | 1.1752 | 0.209 |
Var 12h NI row2-row1 | 1.0865 | 1 |
Var 36h I row2-row1 | 1.06337 | 1 |
Var 36h NI row2-row1 | 0.95805 | 0.61 |
Var 60h I row2-row1 | 1.33568 | 0.562 |
Var 60h NI row2-row1 | 1.01256 | 1 |
Time course 0hI-0hNI | 1.12807 | 0.852 |
Time course 12hI-12hNI | 1.09664 | 0.682 |
Time course 36hI-36hNI | 1.04833 | 0.513 |
Time course 60hI-60hNI | 1.29414 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.81751 | 0.32 |
transgenic ySAMdc/azygous control (breaker) | 1.18715 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.98663 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95888 | 0.126 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77027 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.92014 | 1 |
Manapal/WT (red) | 0.47502 | 0.181 |
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