Expression of 1-1-2.1.8.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00655 | 0.811 |
27DAP/17DAP | 1.04413 | 0.883 |
39DAP/27DAP | 1.26378 | 0.787 |
41DAP/39DAP | 0.90703 | 0.615 |
42DAP/41DAP | 1.17066 | 0.903 |
43DAP/42DAP | 0.89155 | 0.554 |
47DAP/43DAP | 0.96948 | 0.746 |
52DAP/47DAP | 0.90575 | 0.702 |
57DAP/52DAP | 0.81676 | 0.748 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87525 | 0.089 |
17DAP/reference | 1.07369 | 0.369 |
27DAP/reference | 0.91478 | 0.176 |
39DAP/reference | 0.98783 | 0.816 |
41DAP/reference | 0.88281 | 0.154 |
42DAP/reference | 0.89394 | 0.033 |
43DAP/reference | 0.98257 | 0.745 |
47DAP/reference | 0.86419 | 0.011 |
52DAP/reference | 1.00673 | 1 |
57DAP/reference | 0.96588 | 0.435 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19653 | 0.107 |
27DAP/17DAP | 0.99405 | 0.969 |
39DAP/27DAP | 1.07489 | 0.685 |
41DAP/39DAP | 0.95983 | 0.885 |
42DAP/41DAP | 1.15162 | 0.436 |
43DAP/42DAP | 1.11373 | 0.513 |
47DAP/43DAP | 0.99936 | 0.99 |
52DAP/47DAP | 1.10813 | 0.609 |
57DAP/52DAP | 1.0136 | 0.997 |
57DAP/7DAP | 1.17872 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00708 | 1 |
17DAP/reference | 1.13309 | 0.102 |
27DAP/reference | 0.96296 | 0.43 |
39DAP/reference | 0.93025 | 0.307 |
41DAP/reference | 0.82782 | 0.064 |
42DAP/reference | 0.72337 | 0.022 |
43DAP/reference | 0.95364 | 0.351 |
47DAP/reference | 1.02639 | 1 |
52DAP/reference | 0.87207 | 0.15 |
57DAP/reference | 1.02678 | 0.966 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88869 | 0.286 |
17DAP/reference | 0.86735 | 0.223 |
27DAP/reference | 0.84707 | 0.195 |
39DAP/reference | 0.95994 | 0.37 |
41DAP/reference | 0.88987 | 0.173 |
42DAP/reference | 0.69901 | 0.012 |
43DAP/reference | 0.80218 | 0.022 |
47DAP/reference | 0.78858 | 0.031 |
52DAP/reference | 0.91551 | 0.078 |
57DAP/reference | 1.04762 | 0.688 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05414 | 1 |
17DAP/reference | 4.50743 | 0.595 |
27DAP/reference | 0.9637 | 0.465 |
39DAP/reference | 0.92802 | 0.199 |
41DAP/reference | 1.03299 | 0.57 |
42DAP/reference | 0.89004 | 0.22 |
43DAP/reference | 0.95144 | 0.158 |
47DAP/reference | 0.83649 | 0.168 |
52DAP/reference | 1.11472 | 0.917 |
57DAP/reference | 0.87972 | 0.118 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06957 | 0.966 |
26DAP/20DAP | 1.06675 | 0.813 |
34DAP/26DAP | 1.66629 | 0.819 |
51DAP/34DAP | 0.93336 | 0.624 |
52DAP/51DAP | 1.03664 | 0.888 |
53DAP/52DAP | 0.85744 | 0.489 |
55DAP/53DAP | 0.95671 | 0.735 |
57DAP/55DAP | 1.2092 | 0.764 |
62DAP/57DAP | 1.58175 | 0.445 |
68DAP/62DAP | 1.22359 | 0.413 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05675 | 0.663 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.15152 | 0.299 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.84806 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.16738 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.99252 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.06902 | 0.188 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.66363 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87723 | 1 |
IL2-6/WTpooled | 1.27441 | 0.659 |
IL7-5/WTpooled | 0.87866 | 1 |
IL7-3/WTpooled | 1.01761 | 1 |
IL12-4/WTpooled | 0.85637 | 1 |
IL1-4/WTpooled | 0.85949 | 0.562 |
WT/WTpooled | 1.16374 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.87006 | 0.209 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.90757 | 1 |
DC3000/delta hrp 6h | 2.11869 | |
DC3000/delta hrp 12h | 1.11163 | 1 |
DC3000/delta hrp 24h | 1.19777 | 0.535 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.65144 | |
DC3000 delta B/DC3000 delta AB | 0.75051 | 0.236 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.20158 | 0.693 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99173 | 1 |
Var 0h | 0.45726 | 0.933 |
Var 12h I row2-row1 | 1.13844 | 0.692 |
Var 12h NI row2-row1 | 1.13755 | 1 |
Var 36h I row2-row1 | 1.02186 | 1 |
Var 36h NI row2-row1 | 4.20259 | |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.20901 | 0.904 |
Time course 0hI-0hNI | 0.95916 | 0.849 |
Time course 12hI-12hNI | 0.93632 | 0.54 |
Time course 36hI-36hNI | 0.88394 | 0.366 |
Time course 60hI-60hNI | 0.51702 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06008 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 0.82724 | 0.131 |
transgenic ySAMdc/azygous control (red) | 0.94199 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96491 | 0.172 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.71944 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.9091 | 1 |
Manapal/WT (break) | 1.02667 | 1 |
Manapal/WT (red) | 0.97582 | 0.728 |
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