Expression of 1-1-2.1.8.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.006550.811
27DAP/17DAP1.044130.883
39DAP/27DAP1.263780.787
41DAP/39DAP0.907030.615
42DAP/41DAP1.170660.903
43DAP/42DAP0.891550.554
47DAP/43DAP0.969480.746
52DAP/47DAP0.905750.702
57DAP/52DAP0.816760.748

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.875250.089
17DAP/reference1.073690.369
27DAP/reference0.914780.176
39DAP/reference0.987830.816
41DAP/reference0.882810.154
42DAP/reference0.893940.033
43DAP/reference0.982570.745
47DAP/reference0.864190.011
52DAP/reference1.006731
57DAP/reference0.965880.435

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.196530.107
27DAP/17DAP0.994050.969
39DAP/27DAP1.074890.685
41DAP/39DAP0.959830.885
42DAP/41DAP1.151620.436
43DAP/42DAP1.113730.513
47DAP/43DAP0.999360.99
52DAP/47DAP1.108130.609
57DAP/52DAP1.01360.997
57DAP/7DAP1.17872

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.007081
17DAP/reference1.133090.102
27DAP/reference0.962960.43
39DAP/reference0.930250.307
41DAP/reference0.827820.064
42DAP/reference0.723370.022
43DAP/reference0.953640.351
47DAP/reference1.026391
52DAP/reference0.872070.15
57DAP/reference1.026780.966

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.888690.286
17DAP/reference0.867350.223
27DAP/reference0.847070.195
39DAP/reference0.959940.37
41DAP/reference0.889870.173
42DAP/reference0.699010.012
43DAP/reference0.802180.022
47DAP/reference0.788580.031
52DAP/reference0.915510.078
57DAP/reference1.047620.688

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.054141
17DAP/reference4.507430.595
27DAP/reference0.96370.465
39DAP/reference0.928020.199
41DAP/reference1.032990.57
42DAP/reference0.890040.22
43DAP/reference0.951440.158
47DAP/reference0.836490.168
52DAP/reference1.114720.917
57DAP/reference0.879720.118

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.069570.966
26DAP/20DAP1.066750.813
34DAP/26DAP1.666290.819
51DAP/34DAP0.933360.624
52DAP/51DAP1.036640.888
53DAP/52DAP0.857440.489
55DAP/53DAP0.956710.735
57DAP/55DAP1.20920.764
62DAP/57DAP1.581750.445
68DAP/62DAP1.223590.413
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.056750.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.151520.299
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.848061

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.16738
12-2/M82N/AN/A
12-4/M820.99252
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.069020.188
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.66363
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.877231
IL2-6/WTpooled1.274410.659
IL7-5/WTpooled0.878661
IL7-3/WTpooled1.017611
IL12-4/WTpooled0.856371
IL1-4/WTpooled0.859490.562
WT/WTpooled1.163741

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.870060.209

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.907571
DC3000/delta hrp 6h2.11869
DC3000/delta hrp 12h1.111631
DC3000/delta hrp 24h1.197770.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.65144
DC3000 delta B/DC3000 delta AB0.750510.236

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.201580.693
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991731
Var 0h0.457260.933
Var 12h I row2-row11.138440.692
Var 12h NI row2-row11.137551
Var 36h I row2-row11.021861
Var 36h NI row2-row14.20259
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.209010.904
Time course 0hI-0hNI0.959160.849
Time course 12hI-12hNI0.936320.54
Time course 36hI-36hNI0.883940.366
Time course 60hI-60hNI0.517020.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.060080.654
transgenic ySAMdc/azygous control (breaker)0.827240.131
transgenic ySAMdc/azygous control (red)0.941991

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.964910.172

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.719440.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.90911
Manapal/WT (break)1.026671
Manapal/WT (red)0.975820.728