Tomato Functional Genomics Database (TFGD)

Expression of 1-1-2.1.9.6

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.966	0.752
27DAP/17DAP	0.80432	0.478
39DAP/27DAP	1.1746	0.588
41DAP/39DAP	0.82856	0.291
42DAP/41DAP	1.09761	0.967
43DAP/42DAP	0.95598	0.892
47DAP/43DAP	0.62211	0.101
52DAP/47DAP	1.03113	0.997
57DAP/52DAP	1.447	0.645

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.04848	0.544
17DAP/reference	1.0765	0.089
27DAP/reference	1.00882	0.953
39DAP/reference	0.97493	0.72
41DAP/reference	1.16571	0.079
42DAP/reference	0.99697	0.587
43DAP/reference	1.00614	1
47DAP/reference	1.02135	1
52DAP/reference	1.02344	1
57DAP/reference	0.88133	0.235

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.00836	1
27DAP/17DAP	1.13494	0.426
39DAP/27DAP	1.03737	1
41DAP/39DAP	1.10574	0.837
42DAP/41DAP	0.96424	0.712
43DAP/42DAP	1.02211	0.83
47DAP/43DAP	1.0525	0.963
52DAP/47DAP	1.16291	0.58
57DAP/52DAP	1.24257	0.165
57DAP/7DAP	1.00028	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	2.56545	0.025
17DAP/reference	2.08509	0.006
27DAP/reference	1.50875	0.007
39DAP/reference	1.43489	0.006
41DAP/reference	1.46768	0.024
42DAP/reference	1.46075	0.009
43DAP/reference	1.47674	0.007
47DAP/reference	1.18439	0.254
52DAP/reference	1.32232	0.066
57DAP/reference	1.23206	0.024

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.13866	0.234
17DAP/reference	1.09002	0.278
27DAP/reference	0.90468	0.257
39DAP/reference	0.99786	0.661
41DAP/reference	0.76626	0.051
42DAP/reference	0.87301	0.067
43DAP/reference	0.95276	0.539
47DAP/reference	0.9402	0.27
52DAP/reference	1.06825	0.343
57DAP/reference	1.17658	0.085

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	2.06723	0.019
17DAP/reference	1.32815	0.258
27DAP/reference	1.57725	0.028
39DAP/reference	1.50021	0.015
41DAP/reference	1.22562	0.093
42DAP/reference	1.15174	0.51
43DAP/reference	1.30745	0.128
47DAP/reference	1.07018	0.196
52DAP/reference	1.3383	0.1
57DAP/reference	1.16958	0.954

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.06679	1
26DAP/20DAP	1.1752	0.7
34DAP/26DAP	1.00377	0.945
51DAP/34DAP	1.29817	0.339
52DAP/51DAP	1.01055	1
53DAP/52DAP	1.34324	0.046
55DAP/53DAP	0.80912	0.14
57DAP/55DAP	0.91122	0.623
62DAP/57DAP	0.90169	0.681
68DAP/62DAP	0.91998	0.722
68DAP/14DAP	0.93671	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.96955	0.015

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.59786	0.187
Mature Green Tomato/Ripe Tomato	1.3816	0.299
Immature Eggplant/Mature Eggplant	1.23903	0.052
Ripe Pepper/Ripe Tomato	0.51591	0.224
Mature Eggplant/Ripe Tomato	0.76128	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.09168	1
1-1-2/M82	1.1297	1
12-2/M82	0.8616	0.678
12-4/M82	0.93558	1
1-3/M82	1.63763	0.277
2-1-1/M82	0.8883	0.92
2-1/M82	1.19546	0.234
2-6/M82	0.84484	1
3-2/M82	1.36156
4-1-1/M82	0.9642
4-1/M82	0.68726
4-3-2/M82	0.9444
4-3/M82	1.26333	1
5-3/M82	1.1736	0.572
6-2/M82	1.01884	1
6-3/M82	0.89686	1
7-1/M82	1.13293	1
7-2/M82	1.05732	0.318
9-3-2/M82	1.11866

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.47669	0.277
IL2-6/WTpooled	4.29974	0.415
IL7-5/WTpooled	1.00103	1
IL7-3/WTpooled	0.73774	0.31
IL12-4/WTpooled	1.51868	0.538
IL1-4/WTpooled	1.15377	1
WT/WTpooled	1.06509	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.18247	0.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.04674	0.894
DC3000/delta hrp 6h	0.98195	0.95
DC3000/delta hrp 12h	1.10695	1
DC3000/delta hrp 24h	1.51939	0.065

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.11432	0.333
DC3000 delta B/DC3000 delta AB	1.30111	0.118

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.98104	1
Exp 36h	0.96844	0.943
Exp 60h	1.10988	1

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.04315
Var 0h	2.87475	0.98
Var 12h I row2-row1	1.27578	0.222
Var 12h NI row2-row1	1.05283	0.649
Var 36h I row2-row1	1.03498	1
Var 36h NI row2-row1	0.96328
Var 60h I row2-row1	0.67489
Var 60h NI row2-row1	1.02631	1
Time course 0hI-0hNI	0.90865	0.618
Time course 12hI-12hNI	1.06287	0.743
Time course 36hI-36hNI	1.33027	0.005
Time course 60hI-60hNI	1.75865	0.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.97849	0.662
transgenic ySAMdc/azygous control (breaker)	0.94944	0.49
transgenic ySAMdc/azygous control (red)	0.95799	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.99154	0.737

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.58121	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.77931	0.172
Manapal/WT (break)	0.86038	0.333
Manapal/WT (red)	1.17082	0.164