Expression of 1-1-2.1.9.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83142 | 0.31 |
27DAP/17DAP | 0.69115 | 0.161 |
39DAP/27DAP | 1.40048 | 0.122 |
41DAP/39DAP | 0.65322 | 0.068 |
42DAP/41DAP | 1.14656 | 0.916 |
43DAP/42DAP | 0.99682 | 0.925 |
47DAP/43DAP | 0.70573 | 0.205 |
52DAP/47DAP | 0.99223 | 0.875 |
57DAP/52DAP | 1.27631 | 0.55 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.58881 | 0.007 |
17DAP/reference | 1.1148 | 0.318 |
27DAP/reference | 0.80534 | 0.03 |
39DAP/reference | 1.1351 | 0.318 |
41DAP/reference | 1.08167 | 0.48 |
42DAP/reference | 1.1981 | 0.055 |
43DAP/reference | 1.13819 | 0.133 |
47DAP/reference | 1.12589 | 0.037 |
52DAP/reference | 0.75922 | 0.064 |
57DAP/reference | 1.07808 | 0.355 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99674 | 0.826 |
27DAP/17DAP | 0.99391 | 0.969 |
39DAP/27DAP | 0.90461 | 0.149 |
41DAP/39DAP | 1.18534 | 0.55 |
42DAP/41DAP | 0.98485 | 0.797 |
43DAP/42DAP | 0.82519 | 0.028 |
47DAP/43DAP | 0.9893 | 0.939 |
52DAP/47DAP | 0.94677 | 0.79 |
57DAP/52DAP | 1.11802 | 0.462 |
57DAP/7DAP | 0.87236 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.02214 | 0.024 |
17DAP/reference | 1.83078 | 0.006 |
27DAP/reference | 1.44034 | 0.007 |
39DAP/reference | 1.54542 | 0.007 |
41DAP/reference | 1.21327 | 0.101 |
42DAP/reference | 1.16711 | 0.405 |
43DAP/reference | 1.22597 | 0.074 |
47DAP/reference | 1.47423 | 0.052 |
52DAP/reference | 1.63005 | 0.011 |
57DAP/reference | 1.53534 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.49246 | 0.053 |
17DAP/reference | 1.52448 | 0.011 |
27DAP/reference | 1.24103 | 0.1 |
39DAP/reference | 1.22868 | 0.082 |
41DAP/reference | 1.17212 | 0.166 |
42DAP/reference | 1.18741 | 0.144 |
43DAP/reference | 0.96237 | 0.494 |
47DAP/reference | 1.54617 | 0.014 |
52DAP/reference | 1.00077 | 0.761 |
57DAP/reference | 1.17653 | 0.244 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.89215 | 0.015 |
17DAP/reference | 1.35907 | 0.013 |
27DAP/reference | 1.24761 | 0.035 |
39DAP/reference | 1.39107 | 0.024 |
41DAP/reference | 1.21564 | 0.05 |
42DAP/reference | 1.30583 | 0.06 |
43DAP/reference | 1.33063 | 0.049 |
47DAP/reference | 0.9935 | 0.61 |
52DAP/reference | 1.69395 | 0.029 |
57DAP/reference | 1.0964 | 0.311 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92339 | 0.787 |
26DAP/20DAP | 1.64877 | 0.099 |
34DAP/26DAP | 1.05485 | 1 |
51DAP/34DAP | 0.79171 | 0.13 |
52DAP/51DAP | 0.88972 | 1 |
53DAP/52DAP | 0.88142 | 0.498 |
55DAP/53DAP | 0.67792 | 0.028 |
57DAP/55DAP | 1.38482 | 0.865 |
62DAP/57DAP | 1.00704 | 1 |
68DAP/62DAP | 0.66618 | 0.068 |
68DAP/14DAP | 0.94342 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.46451 | 0.041 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.90953 | 0.481 |
Mature Green Tomato/Ripe Tomato | 1.36756 | 0.166 |
Immature Eggplant/Mature Eggplant | 1.15013 | 0.157 |
Ripe Pepper/Ripe Tomato | 1.63546 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.56231 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96602 | 0.961 |
1-1-2/M82 | 1.10884 | |
12-2/M82 | 0.85402 | 0.721 |
12-4/M82 | 1.00163 | 1 |
1-3/M82 | 1.85175 | 0.248 |
2-1-1/M82 | 0.91284 | 0.465 |
2-1/M82 | 0.75489 | |
2-6/M82 | 0.8198 | 0.501 |
3-2/M82 | 1.16204 | |
4-1-1/M82 | 1.20955 | 0.968 |
4-1/M82 | 1.15059 | 1 |
4-3-2/M82 | 1.19444 | |
4-3/M82 | 1.26471 | 1 |
5-3/M82 | 1.2345 | 0.496 |
6-2/M82 | 1.22577 | |
6-3/M82 | 1.0135 | 1 |
7-1/M82 | 0.91624 | 1 |
7-2/M82 | 1.05326 | 1 |
9-3-2/M82 | 1.18798 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.89972 | 0.243 |
IL2-6/WTpooled | 1.0733 | 0.659 |
IL7-5/WTpooled | 2.25449 | 0.792 |
IL7-3/WTpooled | 0.78771 | 0.418 |
IL12-4/WTpooled | 0.85172 | 0.71 |
IL1-4/WTpooled | 0.97685 | 0.699 |
WT/WTpooled | 1.03218 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14646 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07152 | 0.894 |
DC3000/delta hrp 6h | 0.87823 | 0.95 |
DC3000/delta hrp 12h | 0.92455 | 1 |
DC3000/delta hrp 24h | 1.28041 | 0.05 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.14953 | 0.087 |
DC3000 delta B/DC3000 delta AB | 1.11943 | 0.423 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.72704 | 1 |
Exp 36h | 1.08977 | 1 |
Exp 60h | 1.11495 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96892 | 1 |
Var 0h | 0.9088 | 1 |
Var 12h I row2-row1 | 0.97042 | 0.948 |
Var 12h NI row2-row1 | 1.07488 | 1 |
Var 36h I row2-row1 | 1.07204 | 1 |
Var 36h NI row2-row1 | 0.89094 | 0.706 |
Var 60h I row2-row1 | 0.93037 | 0.952 |
Var 60h NI row2-row1 | 0.77957 | 0.298 |
Time course 0hI-0hNI | 0.82843 | 0.162 |
Time course 12hI-12hNI | 1.12437 | 0.175 |
Time course 36hI-36hNI | 1.41144 | 0.089 |
Time course 60hI-60hNI | 1.26897 | 0.033 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93666 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 1.44926 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.05139 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.39736 | 0.042 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.84031 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02663 | 1 |
Manapal/WT (break) | 1.339 | 0.381 |
Manapal/WT (red) | 1.33155 | 0.142 |
|
|