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Expression of 1-1-2.1.9.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.831420.31
27DAP/17DAP0.691150.161
39DAP/27DAP1.400480.122
41DAP/39DAP0.653220.068
42DAP/41DAP1.146560.916
43DAP/42DAP0.996820.925
47DAP/43DAP0.705730.205
52DAP/47DAP0.992230.875
57DAP/52DAP1.276310.55

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.588810.007
17DAP/reference1.11480.318
27DAP/reference0.805340.03
39DAP/reference1.13510.318
41DAP/reference1.081670.48
42DAP/reference1.19810.055
43DAP/reference1.138190.133
47DAP/reference1.125890.037
52DAP/reference0.759220.064
57DAP/reference1.078080.355

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.996740.826
27DAP/17DAP0.993910.969
39DAP/27DAP0.904610.149
41DAP/39DAP1.185340.55
42DAP/41DAP0.984850.797
43DAP/42DAP0.825190.028
47DAP/43DAP0.98930.939
52DAP/47DAP0.946770.79
57DAP/52DAP1.118020.462
57DAP/7DAP0.872361

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.022140.024
17DAP/reference1.830780.006
27DAP/reference1.440340.007
39DAP/reference1.545420.007
41DAP/reference1.213270.101
42DAP/reference1.167110.405
43DAP/reference1.225970.074
47DAP/reference1.474230.052
52DAP/reference1.630050.011
57DAP/reference1.535340.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.492460.053
17DAP/reference1.524480.011
27DAP/reference1.241030.1
39DAP/reference1.228680.082
41DAP/reference1.172120.166
42DAP/reference1.187410.144
43DAP/reference0.962370.494
47DAP/reference1.546170.014
52DAP/reference1.000770.761
57DAP/reference1.176530.244

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.892150.015
17DAP/reference1.359070.013
27DAP/reference1.247610.035
39DAP/reference1.391070.024
41DAP/reference1.215640.05
42DAP/reference1.305830.06
43DAP/reference1.330630.049
47DAP/reference0.99350.61
52DAP/reference1.693950.029
57DAP/reference1.09640.311

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.923390.787
26DAP/20DAP1.648770.099
34DAP/26DAP1.054851
51DAP/34DAP0.791710.13
52DAP/51DAP0.889721
53DAP/52DAP0.881420.498
55DAP/53DAP0.677920.028
57DAP/55DAP1.384820.865
62DAP/57DAP1.007041
68DAP/62DAP0.666180.068
68DAP/14DAP0.943421

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.464510.041

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.909530.481
Mature Green Tomato/Ripe Tomato1.367560.166
Immature Eggplant/Mature Eggplant1.150130.157
Ripe Pepper/Ripe Tomato1.635460.258
Mature Eggplant/Ripe Tomato1.562310.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.966020.961
1-1-2/M821.10884N/A
12-2/M820.854020.721
12-4/M821.001631
1-3/M821.851750.248
2-1-1/M820.912840.465
2-1/M820.75489N/A
2-6/M820.81980.501
3-2/M821.16204N/A
4-1-1/M821.209550.968
4-1/M821.150591
4-3-2/M821.19444N/A
4-3/M821.264711
5-3/M821.23450.496
6-2/M821.22577N/A
6-3/M821.01351
7-1/M820.916241
7-2/M821.053261
9-3-2/M821.187981

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.899720.243
IL2-6/WTpooled1.07330.659
IL7-5/WTpooled2.254490.792
IL7-3/WTpooled0.787710.418
IL12-4/WTpooled0.851720.71
IL1-4/WTpooled0.976850.699
WT/WTpooled1.032181

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.146460.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.071520.894
DC3000/delta hrp 6h0.878230.95
DC3000/delta hrp 12h0.924551
DC3000/delta hrp 24h1.280410.05

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.149530.087
DC3000 delta B/DC3000 delta AB1.119430.423

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.727041
Exp 36h1.089771
Exp 60h1.114951

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.968921
Var 0h0.90881
Var 12h I row2-row10.970420.948
Var 12h NI row2-row11.074881
Var 36h I row2-row11.072041
Var 36h NI row2-row10.890940.706
Var 60h I row2-row10.930370.952
Var 60h NI row2-row10.779570.298
Time course 0hI-0hNI0.828430.162
Time course 12hI-12hNI1.124370.175
Time course 36hI-36hNI1.411440.089
Time course 60hI-60hNI1.268970.033

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.936660.348
transgenic ySAMdc/azygous control (breaker)1.449260.248
transgenic ySAMdc/azygous control (red)1.051390.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.397360.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.840310.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.026631
Manapal/WT (break)1.3390.381
Manapal/WT (red)1.331550.142