Expression of 1-1-2.2.1.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.513540.272
27DAP/17DAP1.699420.424
39DAP/27DAP1.387690.289
41DAP/39DAP0.776080.182
42DAP/41DAP0.870251
43DAP/42DAP0.986840.93
47DAP/43DAP1.36910.481
52DAP/47DAP1.008150.933
57DAP/52DAP1.042360.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.967630.442
17DAP/reference1.05730.412
27DAP/reference1.14230.121
39DAP/reference0.927440.078
41DAP/reference0.905570.065
42DAP/reference1.032320.842
43DAP/reference1.069550.471
47DAP/reference1.06330.365
52DAP/reference0.927290.128
57DAP/reference0.898650.017

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.625820.114
27DAP/17DAP1.105930.775
39DAP/27DAP0.857560.283
41DAP/39DAP0.871580.42
42DAP/41DAP0.953470.721
43DAP/42DAP0.756270.026
47DAP/43DAP0.817510.04
52DAP/47DAP1.200150.508
57DAP/52DAP0.965410.73
57DAP/7DAP1.451071

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.983360.03
17DAP/reference1.38860.042
27DAP/reference1.435490.197
39DAP/reference1.249550.012
41DAP/reference1.272260.062
42DAP/reference2.074150.014
43DAP/reference1.44590.009
47DAP/reference1.315410.187
52DAP/reference1.38460.034
57DAP/reference1.458370.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.935190.329
17DAP/reference1.082740.69
27DAP/reference1.029690.726
39DAP/reference1.049090.22
41DAP/reference1.040470.925
42DAP/reference0.91380.135
43DAP/reference0.966160.516
47DAP/reference0.856530.04
52DAP/reference1.19920.006
57DAP/reference0.98030.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.042060.963
17DAP/reference1.04510.72
27DAP/reference1.348730.111
39DAP/reference1.170360.437
41DAP/reference1.274980.047
42DAP/reference1.238740.51
43DAP/reference1.294010.111
47DAP/reference1.302630.053
52DAP/reference1.13740.837
57DAP/reference1.361410.012

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.003281
26DAP/20DAP0.924031
34DAP/26DAP0.903110.898
51DAP/34DAP0.965870.856
52DAP/51DAP1.232320.481
53DAP/52DAP0.806220.581
55DAP/53DAP0.724430.082
57DAP/55DAP0.720660.333
62DAP/57DAP1.141290.723
68DAP/62DAP1.144860.565
68DAP/14DAP1.039740.762

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.287510.306

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.732150.202
Mature Green Tomato/Ripe Tomato3.182870.034
Immature Eggplant/Mature Eggplant1.041830.528
Ripe Pepper/Ripe Tomato1.41581
Mature Eggplant/Ripe Tomato1.752280.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.00108
12-2/M82N/AN/A
12-4/M820.90149
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.293
6-2/M82N/AN/A
6-3/M820.94442
7-1/M82N/AN/A
7-2/M821.86002
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.218760.365
IL2-6/WTpooled1.31721
IL7-5/WTpooled1.34506
IL7-3/WTpooled2.051570.362
IL12-4/WTpooled1.25260.503
IL1-4/WTpooled1.986330.282
WT/WTpooled0.920051

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.816410.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.799430.941
DC3000/delta hrp 6h1.021120.95
DC3000/delta hrp 12h1.055861
DC3000/delta hrp 24h0.546160.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.4520.023
DC3000 delta B/DC3000 delta AB0.599110.045

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.076661
Exp 36h0.882710.699
Exp 60h0.844850.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.01121
Var 0h2.729680.782
Var 12h I row2-row10.870780.627
Var 12h NI row2-row11.011371
Var 36h I row2-row11.049741
Var 36h NI row2-row11.418590.276
Var 60h I row2-row11.000091
Var 60h NI row2-row11.131610.904
Time course 0hI-0hNI1.020680.852
Time course 12hI-12hNI0.923820.337
Time course 36hI-36hNI0.743370.023
Time course 60hI-60hNI0.146030.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.989520.789
transgenic ySAMdc/azygous control (breaker)0.93920.49
transgenic ySAMdc/azygous control (red)1.068361

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.061980.247

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.475380.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.654820.083
Manapal/WT (break)1.870180.13
Manapal/WT (red)2.492590.133