Expression of 1-1-2.2.1.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.51354 | 0.272 |
27DAP/17DAP | 1.69942 | 0.424 |
39DAP/27DAP | 1.38769 | 0.289 |
41DAP/39DAP | 0.77608 | 0.182 |
42DAP/41DAP | 0.87025 | 1 |
43DAP/42DAP | 0.98684 | 0.93 |
47DAP/43DAP | 1.3691 | 0.481 |
52DAP/47DAP | 1.00815 | 0.933 |
57DAP/52DAP | 1.04236 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96763 | 0.442 |
17DAP/reference | 1.0573 | 0.412 |
27DAP/reference | 1.1423 | 0.121 |
39DAP/reference | 0.92744 | 0.078 |
41DAP/reference | 0.90557 | 0.065 |
42DAP/reference | 1.03232 | 0.842 |
43DAP/reference | 1.06955 | 0.471 |
47DAP/reference | 1.0633 | 0.365 |
52DAP/reference | 0.92729 | 0.128 |
57DAP/reference | 0.89865 | 0.017 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.62582 | 0.114 |
27DAP/17DAP | 1.10593 | 0.775 |
39DAP/27DAP | 0.85756 | 0.283 |
41DAP/39DAP | 0.87158 | 0.42 |
42DAP/41DAP | 0.95347 | 0.721 |
43DAP/42DAP | 0.75627 | 0.026 |
47DAP/43DAP | 0.81751 | 0.04 |
52DAP/47DAP | 1.20015 | 0.508 |
57DAP/52DAP | 0.96541 | 0.73 |
57DAP/7DAP | 1.45107 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.98336 | 0.03 |
17DAP/reference | 1.3886 | 0.042 |
27DAP/reference | 1.43549 | 0.197 |
39DAP/reference | 1.24955 | 0.012 |
41DAP/reference | 1.27226 | 0.062 |
42DAP/reference | 2.07415 | 0.014 |
43DAP/reference | 1.4459 | 0.009 |
47DAP/reference | 1.31541 | 0.187 |
52DAP/reference | 1.3846 | 0.034 |
57DAP/reference | 1.45837 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93519 | 0.329 |
17DAP/reference | 1.08274 | 0.69 |
27DAP/reference | 1.02969 | 0.726 |
39DAP/reference | 1.04909 | 0.22 |
41DAP/reference | 1.04047 | 0.925 |
42DAP/reference | 0.9138 | 0.135 |
43DAP/reference | 0.96616 | 0.516 |
47DAP/reference | 0.85653 | 0.04 |
52DAP/reference | 1.1992 | 0.006 |
57DAP/reference | 0.9803 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04206 | 0.963 |
17DAP/reference | 1.0451 | 0.72 |
27DAP/reference | 1.34873 | 0.111 |
39DAP/reference | 1.17036 | 0.437 |
41DAP/reference | 1.27498 | 0.047 |
42DAP/reference | 1.23874 | 0.51 |
43DAP/reference | 1.29401 | 0.111 |
47DAP/reference | 1.30263 | 0.053 |
52DAP/reference | 1.1374 | 0.837 |
57DAP/reference | 1.36141 | 0.012 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00328 | 1 |
26DAP/20DAP | 0.92403 | 1 |
34DAP/26DAP | 0.90311 | 0.898 |
51DAP/34DAP | 0.96587 | 0.856 |
52DAP/51DAP | 1.23232 | 0.481 |
53DAP/52DAP | 0.80622 | 0.581 |
55DAP/53DAP | 0.72443 | 0.082 |
57DAP/55DAP | 0.72066 | 0.333 |
62DAP/57DAP | 1.14129 | 0.723 |
68DAP/62DAP | 1.14486 | 0.565 |
68DAP/14DAP | 1.03974 | 0.762 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.28751 | 0.306 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.73215 | 0.202 |
Mature Green Tomato/Ripe Tomato | 3.18287 | 0.034 |
Immature Eggplant/Mature Eggplant | 1.04183 | 0.528 |
Ripe Pepper/Ripe Tomato | 1.4158 | 1 |
Mature Eggplant/Ripe Tomato | 1.75228 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.00108 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.90149 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.293 | |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.94442 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.86002 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.21876 | 0.365 |
IL2-6/WTpooled | 1.3172 | 1 |
IL7-5/WTpooled | 1.34506 | |
IL7-3/WTpooled | 2.05157 | 0.362 |
IL12-4/WTpooled | 1.2526 | 0.503 |
IL1-4/WTpooled | 1.98633 | 0.282 |
WT/WTpooled | 0.92005 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.81641 | 0.341 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.79943 | 0.941 |
DC3000/delta hrp 6h | 1.02112 | 0.95 |
DC3000/delta hrp 12h | 1.05586 | 1 |
DC3000/delta hrp 24h | 0.54616 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.452 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.59911 | 0.045 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07666 | 1 |
Exp 36h | 0.88271 | 0.699 |
Exp 60h | 0.84485 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0112 | 1 |
Var 0h | 2.72968 | 0.782 |
Var 12h I row2-row1 | 0.87078 | 0.627 |
Var 12h NI row2-row1 | 1.01137 | 1 |
Var 36h I row2-row1 | 1.04974 | 1 |
Var 36h NI row2-row1 | 1.41859 | 0.276 |
Var 60h I row2-row1 | 1.00009 | 1 |
Var 60h NI row2-row1 | 1.13161 | 0.904 |
Time course 0hI-0hNI | 1.02068 | 0.852 |
Time course 12hI-12hNI | 0.92382 | 0.337 |
Time course 36hI-36hNI | 0.74337 | 0.023 |
Time course 60hI-60hNI | 0.14603 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98952 | 0.789 |
transgenic ySAMdc/azygous control (breaker) | 0.9392 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.06836 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06198 | 0.247 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.47538 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.65482 | 0.083 |
Manapal/WT (break) | 1.87018 | 0.13 |
Manapal/WT (red) | 2.49259 | 0.133 |
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