Expression of 1-1-2.2.1.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.160720.77
27DAP/17DAP1.08290.859
39DAP/27DAP1.590490.119
41DAP/39DAP1.138020.638
42DAP/41DAP1.769140.03
43DAP/42DAP1.413440.217
47DAP/43DAP1.151790.756
52DAP/47DAP0.8250.559
57DAP/52DAP1.173490.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.815840.025
17DAP/reference0.850150.085
27DAP/reference0.965850.567
39DAP/reference0.867160.035
41DAP/reference0.828530.016
42DAP/reference1.083780.068
43DAP/reference0.91750.211
47DAP/reference1.183310.025
52DAP/reference1.264040.011
57DAP/reference1.157520.118

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.14980.508
27DAP/17DAP1.088150.78
39DAP/27DAP1.20120.14
41DAP/39DAP0.92610.793
42DAP/41DAP1.047650.947
43DAP/42DAP1.071470.478
47DAP/43DAP0.971480.805
52DAP/47DAP1.089470.724
57DAP/52DAP1.111160.507
57DAP/7DAP0.45981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.755420.108
17DAP/reference0.75740.013
27DAP/reference0.806470.071
39DAP/reference0.913510.146
41DAP/reference0.806770.044
42DAP/reference0.779720.017
43DAP/reference0.948360.421
47DAP/reference0.902860.293
52DAP/reference0.817320.072
57DAP/reference0.88440.069

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.799140.029
17DAP/reference0.861950.099
27DAP/reference1.036621
39DAP/reference1.094410.67
41DAP/reference1.266850.149
42DAP/reference0.952270.289
43DAP/reference0.995190.569
47DAP/reference0.915550.154
52DAP/reference1.079910.702
57DAP/reference0.829270.05

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.638540.039
17DAP/reference0.879340.308
27DAP/reference0.861050.195
39DAP/reference0.755830.031
41DAP/reference0.811720.043
42DAP/reference1.137020.382
43DAP/reference1.165510.254
47DAP/reference1.01221
52DAP/reference1.075730.826
57DAP/reference1.18210.394

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.963551
26DAP/20DAP1.105180.713
34DAP/26DAP1.014921
51DAP/34DAP1.1731
52DAP/51DAP1.047890.808
53DAP/52DAP1.09180.623
55DAP/53DAP1.17580.301
57DAP/55DAP0.782970.19
62DAP/57DAP0.860590.681
68DAP/62DAP1.318130.089
68DAP/14DAP1.345520.279

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.971160.607

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.348990.089
Mature Green Tomato/Ripe Tomato0.253460.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.34560.224
Mature Eggplant/Ripe Tomato0.125670.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.497041
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.528790.268
5-3/M821.165211
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.73184
7-2/M821.76185
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.73772
IL1-4/WTpooledN/AN/A
WT/WTpooled1.79341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.213360.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.78261
DC3000/delta hrp 6h1.212771
DC3000/delta hrp 12h0.903061
DC3000/delta hrp 24h0.924190.618

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.054770.556
DC3000 delta B/DC3000 delta AB1.023640.636

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.954851
Var 0h1.010091
Var 12h I row2-row10.838040.418
Var 12h NI row2-row11.163740.649
Var 36h I row2-row10.820881
Var 36h NI row2-row11.119021
Var 60h I row2-row10.671830.285
Var 60h NI row2-row11.064660.904
Time course 0hI-0hNI0.959440.758
Time course 12hI-12hNI1.014240.854
Time course 36hI-36hNI1.235420.006
Time course 60hI-60hNI2.028830.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.199250.431
transgenic ySAMdc/azygous control (breaker)1.253750.248
transgenic ySAMdc/azygous control (red)1.513180.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.997330.757

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.628570.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.908961
Manapal/WT (break)0.853081
Manapal/WT (red)0.98780.863