Expression of 1-1-2.2.1.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16072 | 0.77 |
27DAP/17DAP | 1.0829 | 0.859 |
39DAP/27DAP | 1.59049 | 0.119 |
41DAP/39DAP | 1.13802 | 0.638 |
42DAP/41DAP | 1.76914 | 0.03 |
43DAP/42DAP | 1.41344 | 0.217 |
47DAP/43DAP | 1.15179 | 0.756 |
52DAP/47DAP | 0.825 | 0.559 |
57DAP/52DAP | 1.17349 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81584 | 0.025 |
17DAP/reference | 0.85015 | 0.085 |
27DAP/reference | 0.96585 | 0.567 |
39DAP/reference | 0.86716 | 0.035 |
41DAP/reference | 0.82853 | 0.016 |
42DAP/reference | 1.08378 | 0.068 |
43DAP/reference | 0.9175 | 0.211 |
47DAP/reference | 1.18331 | 0.025 |
52DAP/reference | 1.26404 | 0.011 |
57DAP/reference | 1.15752 | 0.118 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1498 | 0.508 |
27DAP/17DAP | 1.08815 | 0.78 |
39DAP/27DAP | 1.2012 | 0.14 |
41DAP/39DAP | 0.9261 | 0.793 |
42DAP/41DAP | 1.04765 | 0.947 |
43DAP/42DAP | 1.07147 | 0.478 |
47DAP/43DAP | 0.97148 | 0.805 |
52DAP/47DAP | 1.08947 | 0.724 |
57DAP/52DAP | 1.11116 | 0.507 |
57DAP/7DAP | 0.4598 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.75542 | 0.108 |
17DAP/reference | 0.7574 | 0.013 |
27DAP/reference | 0.80647 | 0.071 |
39DAP/reference | 0.91351 | 0.146 |
41DAP/reference | 0.80677 | 0.044 |
42DAP/reference | 0.77972 | 0.017 |
43DAP/reference | 0.94836 | 0.421 |
47DAP/reference | 0.90286 | 0.293 |
52DAP/reference | 0.81732 | 0.072 |
57DAP/reference | 0.8844 | 0.069 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79914 | 0.029 |
17DAP/reference | 0.86195 | 0.099 |
27DAP/reference | 1.03662 | 1 |
39DAP/reference | 1.09441 | 0.67 |
41DAP/reference | 1.26685 | 0.149 |
42DAP/reference | 0.95227 | 0.289 |
43DAP/reference | 0.99519 | 0.569 |
47DAP/reference | 0.91555 | 0.154 |
52DAP/reference | 1.07991 | 0.702 |
57DAP/reference | 0.82927 | 0.05 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.63854 | 0.039 |
17DAP/reference | 0.87934 | 0.308 |
27DAP/reference | 0.86105 | 0.195 |
39DAP/reference | 0.75583 | 0.031 |
41DAP/reference | 0.81172 | 0.043 |
42DAP/reference | 1.13702 | 0.382 |
43DAP/reference | 1.16551 | 0.254 |
47DAP/reference | 1.0122 | 1 |
52DAP/reference | 1.07573 | 0.826 |
57DAP/reference | 1.1821 | 0.394 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96355 | 1 |
26DAP/20DAP | 1.10518 | 0.713 |
34DAP/26DAP | 1.01492 | 1 |
51DAP/34DAP | 1.1731 | |
52DAP/51DAP | 1.04789 | 0.808 |
53DAP/52DAP | 1.0918 | 0.623 |
55DAP/53DAP | 1.1758 | 0.301 |
57DAP/55DAP | 0.78297 | 0.19 |
62DAP/57DAP | 0.86059 | 0.681 |
68DAP/62DAP | 1.31813 | 0.089 |
68DAP/14DAP | 1.34552 | 0.279 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97116 | 0.607 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.34899 | 0.089 |
Mature Green Tomato/Ripe Tomato | 0.25346 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.3456 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.12567 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.49704 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.52879 | 0.268 |
5-3/M82 | 1.16521 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.73184 | |
7-2/M82 | 1.76185 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.73772 | |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 1.7934 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21336 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.7826 | 1 |
DC3000/delta hrp 6h | 1.21277 | 1 |
DC3000/delta hrp 12h | 0.90306 | 1 |
DC3000/delta hrp 24h | 0.92419 | 0.618 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05477 | 0.556 |
DC3000 delta B/DC3000 delta AB | 1.02364 | 0.636 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95485 | 1 |
Var 0h | 1.01009 | 1 |
Var 12h I row2-row1 | 0.83804 | 0.418 |
Var 12h NI row2-row1 | 1.16374 | 0.649 |
Var 36h I row2-row1 | 0.82088 | 1 |
Var 36h NI row2-row1 | 1.11902 | 1 |
Var 60h I row2-row1 | 0.67183 | 0.285 |
Var 60h NI row2-row1 | 1.06466 | 0.904 |
Time course 0hI-0hNI | 0.95944 | 0.758 |
Time course 12hI-12hNI | 1.01424 | 0.854 |
Time course 36hI-36hNI | 1.23542 | 0.006 |
Time course 60hI-60hNI | 2.02883 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.19925 | 0.431 |
transgenic ySAMdc/azygous control (breaker) | 1.25375 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.51318 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99733 | 0.757 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.62857 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.90896 | 1 |
Manapal/WT (break) | 0.85308 | 1 |
Manapal/WT (red) | 0.9878 | 0.863 |
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