Expression of 1-1-2.2.10.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.968290.713
27DAP/17DAP1.065550.916
39DAP/27DAP1.144480.961
41DAP/39DAP0.753890.2
42DAP/41DAP0.951081
43DAP/42DAP0.997570.937
47DAP/43DAP0.664450.117
52DAP/47DAP1.183660.758
57DAP/52DAP1.242970.652

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.032420.055
17DAP/reference0.645410.018
27DAP/reference0.597970.013
39DAP/reference0.921930.35
41DAP/reference0.629750.008
42DAP/reference2.854530.001
43DAP/reference2.470640.006
47DAP/reference1.662270.003
52DAP/reference0.643560.012
57DAP/reference1.119341

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.038290.91
27DAP/17DAP0.888010.508
39DAP/27DAP0.966130.673
41DAP/39DAP0.883980.617
42DAP/41DAP1.006140.887
43DAP/42DAP1.0031
47DAP/43DAP1.080790.699
52DAP/47DAP0.828790.56
57DAP/52DAP1.243350.308
57DAP/7DAP2.00161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.575810.024
17DAP/reference1.774920.01
27DAP/reference1.381290.01
39DAP/reference2.736660.005
41DAP/reference1.913090.013
42DAP/reference2.767280.006
43DAP/reference2.266830.007
47DAP/reference3.574020.014
52DAP/reference2.544040.009
57DAP/reference1.799850.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.234090.167
17DAP/reference0.743620.058
27DAP/reference2.0720.034
39DAP/reference1.516450.087
41DAP/reference1.096611
42DAP/reference1.554170.008
43DAP/reference1.415960.547
47DAP/reference2.27740.026
52DAP/reference0.670490.004
57DAP/reference1.211280.957

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.786960.031
17DAP/reference1.020210.792
27DAP/reference1.434180.031
39DAP/reference1.800460.006
41DAP/reference1.33570.016
42DAP/reference2.808570.01
43DAP/reference3.556880.014
47DAP/reference1.267570.218
52DAP/reference2.170540.04
57DAP/reference2.412030.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.74102
26DAP/20DAP1.309240.46
34DAP/26DAP1.052991
51DAP/34DAP1.167240.154
52DAP/51DAP1.05350.776
53DAP/52DAP1.108510.458
55DAP/53DAP0.816660.195
57DAP/55DAP1.006750.914
62DAP/57DAP1.617870.445
68DAP/62DAP1.312360.323
68DAP/14DAP1.927450.103

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.625930.033

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.419560.113
Mature Green Tomato/Ripe Tomato3.521250.016
Immature Eggplant/Mature Eggplant27.04660.045
Ripe Pepper/Ripe Tomato0.239820.224
Mature Eggplant/Ripe Tomato0.790751

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.130381
1-1-2/M821.208151
12-2/M820.76446
12-4/M820.801140.619
1-3/M825.5548
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M822.17309
3-2/M82N/AN/A
4-1-1/M822.64399
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M822.860560.268
5-3/M821.044591
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.496341
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.0965
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.0510.362
IL12-4/WTpooled0.907791
IL1-4/WTpooled1.834941
WT/WTpooled0.999541

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.227591

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.086960.921
DC3000/delta hrp 6h1.148431
DC3000/delta hrp 12h0.947261
DC3000/delta hrp 24h0.945160.67

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.332850.046
DC3000 delta B/DC3000 delta AB1.375810.091

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.440310.227
Exp 36h2.167830.409
Exp 60h2.209050.205

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988731
Var 0h1.109640.594
Var 12h I row2-row11.091040.736
Var 12h NI row2-row11.168980.649
Var 36h I row2-row10.95181
Var 36h NI row2-row11.065981
Var 60h I row2-row10.733550.306
Var 60h NI row2-row10.953770.932
Time course 0hI-0hNI0.933940.37
Time course 12hI-12hNI0.975990.841
Time course 36hI-36hNI1.30840.009
Time course 60hI-60hNI2.138580.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.886190.297
transgenic ySAMdc/azygous control (breaker)0.644710.173
transgenic ySAMdc/azygous control (red)1.189070.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.932120.156

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.721460.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.883180.105
Manapal/WT (break)0.698540.299
Manapal/WT (red)2.03060.15