Expression of 1-1-2.2.10.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96829 | 0.713 |
27DAP/17DAP | 1.06555 | 0.916 |
39DAP/27DAP | 1.14448 | 0.961 |
41DAP/39DAP | 0.75389 | 0.2 |
42DAP/41DAP | 0.95108 | 1 |
43DAP/42DAP | 0.99757 | 0.937 |
47DAP/43DAP | 0.66445 | 0.117 |
52DAP/47DAP | 1.18366 | 0.758 |
57DAP/52DAP | 1.24297 | 0.652 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.03242 | 0.055 |
17DAP/reference | 0.64541 | 0.018 |
27DAP/reference | 0.59797 | 0.013 |
39DAP/reference | 0.92193 | 0.35 |
41DAP/reference | 0.62975 | 0.008 |
42DAP/reference | 2.85453 | 0.001 |
43DAP/reference | 2.47064 | 0.006 |
47DAP/reference | 1.66227 | 0.003 |
52DAP/reference | 0.64356 | 0.012 |
57DAP/reference | 1.11934 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03829 | 0.91 |
27DAP/17DAP | 0.88801 | 0.508 |
39DAP/27DAP | 0.96613 | 0.673 |
41DAP/39DAP | 0.88398 | 0.617 |
42DAP/41DAP | 1.00614 | 0.887 |
43DAP/42DAP | 1.003 | 1 |
47DAP/43DAP | 1.08079 | 0.699 |
52DAP/47DAP | 0.82879 | 0.56 |
57DAP/52DAP | 1.24335 | 0.308 |
57DAP/7DAP | 2.0016 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.57581 | 0.024 |
17DAP/reference | 1.77492 | 0.01 |
27DAP/reference | 1.38129 | 0.01 |
39DAP/reference | 2.73666 | 0.005 |
41DAP/reference | 1.91309 | 0.013 |
42DAP/reference | 2.76728 | 0.006 |
43DAP/reference | 2.26683 | 0.007 |
47DAP/reference | 3.57402 | 0.014 |
52DAP/reference | 2.54404 | 0.009 |
57DAP/reference | 1.79985 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23409 | 0.167 |
17DAP/reference | 0.74362 | 0.058 |
27DAP/reference | 2.072 | 0.034 |
39DAP/reference | 1.51645 | 0.087 |
41DAP/reference | 1.09661 | 1 |
42DAP/reference | 1.55417 | 0.008 |
43DAP/reference | 1.41596 | 0.547 |
47DAP/reference | 2.2774 | 0.026 |
52DAP/reference | 0.67049 | 0.004 |
57DAP/reference | 1.21128 | 0.957 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.78696 | 0.031 |
17DAP/reference | 1.02021 | 0.792 |
27DAP/reference | 1.43418 | 0.031 |
39DAP/reference | 1.80046 | 0.006 |
41DAP/reference | 1.3357 | 0.016 |
42DAP/reference | 2.80857 | 0.01 |
43DAP/reference | 3.55688 | 0.014 |
47DAP/reference | 1.26757 | 0.218 |
52DAP/reference | 2.17054 | 0.04 |
57DAP/reference | 2.41203 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.74102 | |
26DAP/20DAP | 1.30924 | 0.46 |
34DAP/26DAP | 1.05299 | 1 |
51DAP/34DAP | 1.16724 | 0.154 |
52DAP/51DAP | 1.0535 | 0.776 |
53DAP/52DAP | 1.10851 | 0.458 |
55DAP/53DAP | 0.81666 | 0.195 |
57DAP/55DAP | 1.00675 | 0.914 |
62DAP/57DAP | 1.61787 | 0.445 |
68DAP/62DAP | 1.31236 | 0.323 |
68DAP/14DAP | 1.92745 | 0.103 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.62593 | 0.033 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.41956 | 0.113 |
Mature Green Tomato/Ripe Tomato | 3.52125 | 0.016 |
Immature Eggplant/Mature Eggplant | 27.0466 | 0.045 |
Ripe Pepper/Ripe Tomato | 0.23982 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.79075 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.13038 | 1 |
1-1-2/M82 | 1.20815 | 1 |
12-2/M82 | 0.76446 | |
12-4/M82 | 0.80114 | 0.619 |
1-3/M82 | 5.5548 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 2.17309 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 2.64399 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 2.86056 | 0.268 |
5-3/M82 | 1.04459 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.49634 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.0965 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.051 | 0.362 |
IL12-4/WTpooled | 0.90779 | 1 |
IL1-4/WTpooled | 1.83494 | 1 |
WT/WTpooled | 0.99954 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.22759 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08696 | 0.921 |
DC3000/delta hrp 6h | 1.14843 | 1 |
DC3000/delta hrp 12h | 0.94726 | 1 |
DC3000/delta hrp 24h | 0.94516 | 0.67 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.33285 | 0.046 |
DC3000 delta B/DC3000 delta AB | 1.37581 | 0.091 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.44031 | 0.227 |
Exp 36h | 2.16783 | 0.409 |
Exp 60h | 2.20905 | 0.205 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98873 | 1 |
Var 0h | 1.10964 | 0.594 |
Var 12h I row2-row1 | 1.09104 | 0.736 |
Var 12h NI row2-row1 | 1.16898 | 0.649 |
Var 36h I row2-row1 | 0.9518 | 1 |
Var 36h NI row2-row1 | 1.06598 | 1 |
Var 60h I row2-row1 | 0.73355 | 0.306 |
Var 60h NI row2-row1 | 0.95377 | 0.932 |
Time course 0hI-0hNI | 0.93394 | 0.37 |
Time course 12hI-12hNI | 0.97599 | 0.841 |
Time course 36hI-36hNI | 1.3084 | 0.009 |
Time course 60hI-60hNI | 2.13858 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88619 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 0.64471 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.18907 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93212 | 0.156 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.72146 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.88318 | 0.105 |
Manapal/WT (break) | 0.69854 | 0.299 |
Manapal/WT (red) | 2.0306 | 0.15 |
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