Expression of 1-1-2.2.10.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.74450.2
27DAP/17DAP1.200020.813
39DAP/27DAP0.878720.564
41DAP/39DAP0.953270.789
42DAP/41DAP1.24990.719
43DAP/42DAP0.925150.854
47DAP/43DAP1.158720.668
52DAP/47DAP1.198340.729
57DAP/52DAP0.816250.836

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.990920.679
17DAP/reference1.135560.071
27DAP/reference1.109920.365
39DAP/reference1.095260.445
41DAP/reference0.926510.341
42DAP/reference0.882430.043
43DAP/reference0.959660.316
47DAP/reference1.035550.575
52DAP/reference0.991970.654
57DAP/reference1.070330.582

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.09150.749
27DAP/17DAP1.13930.831
39DAP/27DAP0.943150.721
41DAP/39DAP0.95530.885
42DAP/41DAP0.888190.269
43DAP/42DAP1.004060.96
47DAP/43DAP0.811280.476
52DAP/47DAP0.962160.814
57DAP/52DAP1.030890.899
57DAP/7DAP2.03042

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.996860.682
17DAP/reference1.02591
27DAP/reference1.011241
39DAP/reference0.916380.126
41DAP/reference1.07740.46
42DAP/reference0.793010.095
43DAP/reference0.865080.079
47DAP/reference0.937940.504
52DAP/reference0.860320.09
57DAP/reference0.895840.083

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.507030.164
17DAP/reference0.989730.728
27DAP/reference1.095840.352
39DAP/reference0.93860.265
41DAP/reference0.992080.57
42DAP/reference0.963070.482
43DAP/reference1.181690.159
47DAP/reference1.076280.639
52DAP/reference1.107080.702
57DAP/reference1.153030.567

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.831120.021
17DAP/reference0.992910.778
27DAP/reference1.024641
39DAP/reference0.998610.755
41DAP/reference0.970450.512
42DAP/reference0.938510.287
43DAP/reference0.983310.639
47DAP/reference1.01651
52DAP/reference0.834910.216
57DAP/reference0.988050.661

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.242270.966
26DAP/20DAP0.839951
34DAP/26DAP1.029691
51DAP/34DAP1.026140.978
52DAP/51DAP0.706541
53DAP/52DAP1.296150.108
55DAP/53DAP0.982420.894
57DAP/55DAP1.379440.666
62DAP/57DAP0.833030.28
68DAP/62DAP0.979410.834
68DAP/14DAP1.335520.541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.775210.087

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.715850.213
Mature Green Tomato/Ripe Tomato1.1410.632
Immature Eggplant/Mature Eggplant0.885830.72
Ripe Pepper/Ripe Tomato2.536981
Mature Eggplant/Ripe Tomato2.314040.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.92531
1-1-2/M821.16024
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.101910.572
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.03076
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.041110.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.86521
IL12-4/WTpooled0.850210.566
IL1-4/WTpooled0.995221
WT/WTpooled1.012231

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.956021

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.167620.921
DC3000/delta hrp 6h0.982580.95
DC3000/delta hrp 12h0.91521
DC3000/delta hrp 24h1.106480.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.745240.483

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.980551
Exp 36h1.120431
Exp 60h1.148490.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.082041
Var 0h0.988021
Var 12h I row2-row10.96210.705
Var 12h NI row2-row11.075430.34
Var 36h I row2-row11.143660.309
Var 36h NI row2-row12.553681
Var 60h I row2-row10.728840.306
Var 60h NI row2-row11.032631
Time course 0hI-0hNI0.976630.911
Time course 12hI-12hNI0.988490.95
Time course 36hI-36hNI1.11680.114
Time course 60hI-60hNI1.356660.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.952880.391
transgenic ySAMdc/azygous control (breaker)1.02421
transgenic ySAMdc/azygous control (red)1.091150.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.163210.063

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.777120.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.117290.307
Manapal/WT (break)1.081561
Manapal/WT (red)0.78260.188