Expression of 1-1-2.2.10.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7445 | 0.2 |
27DAP/17DAP | 1.20002 | 0.813 |
39DAP/27DAP | 0.87872 | 0.564 |
41DAP/39DAP | 0.95327 | 0.789 |
42DAP/41DAP | 1.2499 | 0.719 |
43DAP/42DAP | 0.92515 | 0.854 |
47DAP/43DAP | 1.15872 | 0.668 |
52DAP/47DAP | 1.19834 | 0.729 |
57DAP/52DAP | 0.81625 | 0.836 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99092 | 0.679 |
17DAP/reference | 1.13556 | 0.071 |
27DAP/reference | 1.10992 | 0.365 |
39DAP/reference | 1.09526 | 0.445 |
41DAP/reference | 0.92651 | 0.341 |
42DAP/reference | 0.88243 | 0.043 |
43DAP/reference | 0.95966 | 0.316 |
47DAP/reference | 1.03555 | 0.575 |
52DAP/reference | 0.99197 | 0.654 |
57DAP/reference | 1.07033 | 0.582 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0915 | 0.749 |
27DAP/17DAP | 1.1393 | 0.831 |
39DAP/27DAP | 0.94315 | 0.721 |
41DAP/39DAP | 0.9553 | 0.885 |
42DAP/41DAP | 0.88819 | 0.269 |
43DAP/42DAP | 1.00406 | 0.96 |
47DAP/43DAP | 0.81128 | 0.476 |
52DAP/47DAP | 0.96216 | 0.814 |
57DAP/52DAP | 1.03089 | 0.899 |
57DAP/7DAP | 2.03042 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99686 | 0.682 |
17DAP/reference | 1.0259 | 1 |
27DAP/reference | 1.01124 | 1 |
39DAP/reference | 0.91638 | 0.126 |
41DAP/reference | 1.0774 | 0.46 |
42DAP/reference | 0.79301 | 0.095 |
43DAP/reference | 0.86508 | 0.079 |
47DAP/reference | 0.93794 | 0.504 |
52DAP/reference | 0.86032 | 0.09 |
57DAP/reference | 0.89584 | 0.083 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50703 | 0.164 |
17DAP/reference | 0.98973 | 0.728 |
27DAP/reference | 1.09584 | 0.352 |
39DAP/reference | 0.9386 | 0.265 |
41DAP/reference | 0.99208 | 0.57 |
42DAP/reference | 0.96307 | 0.482 |
43DAP/reference | 1.18169 | 0.159 |
47DAP/reference | 1.07628 | 0.639 |
52DAP/reference | 1.10708 | 0.702 |
57DAP/reference | 1.15303 | 0.567 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83112 | 0.021 |
17DAP/reference | 0.99291 | 0.778 |
27DAP/reference | 1.02464 | 1 |
39DAP/reference | 0.99861 | 0.755 |
41DAP/reference | 0.97045 | 0.512 |
42DAP/reference | 0.93851 | 0.287 |
43DAP/reference | 0.98331 | 0.639 |
47DAP/reference | 1.0165 | 1 |
52DAP/reference | 0.83491 | 0.216 |
57DAP/reference | 0.98805 | 0.661 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.24227 | 0.966 |
26DAP/20DAP | 0.83995 | 1 |
34DAP/26DAP | 1.02969 | 1 |
51DAP/34DAP | 1.02614 | 0.978 |
52DAP/51DAP | 0.70654 | 1 |
53DAP/52DAP | 1.29615 | 0.108 |
55DAP/53DAP | 0.98242 | 0.894 |
57DAP/55DAP | 1.37944 | 0.666 |
62DAP/57DAP | 0.83303 | 0.28 |
68DAP/62DAP | 0.97941 | 0.834 |
68DAP/14DAP | 1.33552 | 0.541 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.77521 | 0.087 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.71585 | 0.213 |
Mature Green Tomato/Ripe Tomato | 1.141 | 0.632 |
Immature Eggplant/Mature Eggplant | 0.88583 | 0.72 |
Ripe Pepper/Ripe Tomato | 2.53698 | 1 |
Mature Eggplant/Ripe Tomato | 2.31404 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92531 | |
1-1-2/M82 | 1.16024 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.10191 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.03076 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.04111 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.8652 | 1 |
IL12-4/WTpooled | 0.85021 | 0.566 |
IL1-4/WTpooled | 0.99522 | 1 |
WT/WTpooled | 1.01223 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95602 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.16762 | 0.921 |
DC3000/delta hrp 6h | 0.98258 | 0.95 |
DC3000/delta hrp 12h | 0.9152 | 1 |
DC3000/delta hrp 24h | 1.10648 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.74524 | 0.483 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98055 | 1 |
Exp 36h | 1.12043 | 1 |
Exp 60h | 1.14849 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.08204 | 1 |
Var 0h | 0.98802 | 1 |
Var 12h I row2-row1 | 0.9621 | 0.705 |
Var 12h NI row2-row1 | 1.07543 | 0.34 |
Var 36h I row2-row1 | 1.14366 | 0.309 |
Var 36h NI row2-row1 | 2.55368 | 1 |
Var 60h I row2-row1 | 0.72884 | 0.306 |
Var 60h NI row2-row1 | 1.03263 | 1 |
Time course 0hI-0hNI | 0.97663 | 0.911 |
Time course 12hI-12hNI | 0.98849 | 0.95 |
Time course 36hI-36hNI | 1.1168 | 0.114 |
Time course 60hI-60hNI | 1.35666 | 0.012 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95288 | 0.391 |
transgenic ySAMdc/azygous control (breaker) | 1.0242 | 1 |
transgenic ySAMdc/azygous control (red) | 1.09115 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.16321 | 0.063 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77712 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.11729 | 0.307 |
Manapal/WT (break) | 1.08156 | 1 |
Manapal/WT (red) | 0.7826 | 0.188 |
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