Expression of 1-1-2.2.10.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.19641 | 0.124 |
27DAP/17DAP | 1.45399 | 0.613 |
39DAP/27DAP | 1.01707 | 0.899 |
41DAP/39DAP | 0.98281 | 0.841 |
42DAP/41DAP | 0.85642 | 1 |
43DAP/42DAP | 0.91345 | 0.851 |
47DAP/43DAP | 1.15466 | 0.727 |
52DAP/47DAP | 1.46593 | 0.403 |
57DAP/52DAP | 1.20504 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89369 | 0.188 |
17DAP/reference | 0.77622 | 0.008 |
27DAP/reference | 1.09895 | 0.709 |
39DAP/reference | 0.91347 | 0.121 |
41DAP/reference | 0.64677 | 0.013 |
42DAP/reference | 0.9048 | 0.05 |
43DAP/reference | 0.9814 | 0.708 |
47DAP/reference | 1.15224 | 0.154 |
52DAP/reference | 1.17541 | 0.149 |
57DAP/reference | 1.56612 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.3615 | 0.34 |
27DAP/17DAP | 0.86702 | 0.475 |
39DAP/27DAP | 1.32786 | 0.128 |
41DAP/39DAP | 0.87324 | 0.481 |
42DAP/41DAP | 1.15532 | 0.622 |
43DAP/42DAP | 1.07641 | 0.351 |
47DAP/43DAP | 0.94978 | 0.597 |
52DAP/47DAP | 1.00718 | 0.959 |
57DAP/52DAP | 1.14301 | 0.479 |
57DAP/7DAP | 1.5793 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00656 | 1 |
17DAP/reference | 1.21467 | 0.019 |
27DAP/reference | 1.30367 | 0.026 |
39DAP/reference | 1.26344 | 0.351 |
41DAP/reference | 1.10849 | 0.745 |
42DAP/reference | 1.38898 | 0.076 |
43DAP/reference | 1.11939 | 0.386 |
47DAP/reference | 0.94778 | 0.504 |
52DAP/reference | 0.98027 | 0.523 |
57DAP/reference | 1.16591 | 0.035 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93106 | 0.441 |
17DAP/reference | 0.92068 | 0.326 |
27DAP/reference | 0.60946 | 0.053 |
39DAP/reference | 0.84507 | 0.126 |
41DAP/reference | 0.76347 | 0.03 |
42DAP/reference | 0.71374 | 0.024 |
43DAP/reference | 0.6932 | 0.044 |
47DAP/reference | 1.08125 | 0.512 |
52DAP/reference | 0.77286 | 0.025 |
57DAP/reference | 0.97784 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18596 | 0.23 |
17DAP/reference | 0.95113 | 0.537 |
27DAP/reference | 1.33741 | 0.033 |
39DAP/reference | 1.14569 | 0.406 |
41DAP/reference | 0.96492 | 0.512 |
42DAP/reference | 1.11251 | 0.4 |
43DAP/reference | 0.97551 | 0.568 |
47DAP/reference | 0.86258 | 0.139 |
52DAP/reference | 1.79924 | 0.123 |
57DAP/reference | 1.07923 | 0.539 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90626 | 0.997 |
26DAP/20DAP | 2.01228 | 0.141 |
34DAP/26DAP | 1.31762 | 0.819 |
51DAP/34DAP | 1.35505 | 0.365 |
52DAP/51DAP | 1.02371 | 1 |
53DAP/52DAP | 0.89429 | 0.527 |
55DAP/53DAP | 0.91763 | 0.698 |
57DAP/55DAP | 1.0746 | 1 |
62DAP/57DAP | 1.06817 | 1 |
68DAP/62DAP | 1.06488 | 0.885 |
68DAP/14DAP | 0.72756 | 0.069 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.93707 | 0.017 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.15885 | 0.176 |
Mature Green Tomato/Ripe Tomato | 0.95755 | 0.522 |
Immature Eggplant/Mature Eggplant | 0.99197 | 1 |
Ripe Pepper/Ripe Tomato | 0.61417 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.72447 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.76807 | 0.616 |
1-1-2/M82 | 1.00054 | 1 |
12-2/M82 | 0.82483 | 0.678 |
12-4/M82 | 0.7328 | 0.358 |
1-3/M82 | 1.87042 | 0.248 |
2-1-1/M82 | 0.45662 | |
2-1/M82 | 1.01217 | |
2-6/M82 | 0.65488 | 0.501 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.91106 | 1 |
4-1/M82 | 1.16163 | |
4-3-2/M82 | 0.74884 | |
4-3/M82 | 0.55168 | 0.404 |
5-3/M82 | 1.32011 | 1 |
6-2/M82 | 0.77916 | 0.473 |
6-3/M82 | 2.06165 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.98347 | 1 |
9-3-2/M82 | 0.83736 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88991 | 0.243 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.49967 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.13416 | 0.426 |
WT/WTpooled | 1.00025 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.10445 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09623 | 0.724 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.90088 | 1 |
DC3000/delta hrp 24h | 0.63726 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.32696 | 0.408 |
DC3000 delta B/DC3000 delta AB | 1.24008 | 0.298 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.20249 | 1 |
Exp 36h | 1.09273 | 0.489 |
Exp 60h | 0.91674 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94048 | 1 |
Var 0h | 0.92561 | 1 |
Var 12h I row2-row1 | 1.20924 | 0.544 |
Var 12h NI row2-row1 | 1.19365 | 0.34 |
Var 36h I row2-row1 | 1.09665 | 0.742 |
Var 36h NI row2-row1 | 0.74678 | 0.341 |
Var 60h I row2-row1 | 0.71571 | 0.582 |
Var 60h NI row2-row1 | 1.04772 | 1 |
Time course 0hI-0hNI | 1.02731 | 0.867 |
Time course 12hI-12hNI | 0.97846 | 0.855 |
Time course 36hI-36hNI | 1.29692 | 0.011 |
Time course 60hI-60hNI | 1.10038 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.85947 | 0.32 |
transgenic ySAMdc/azygous control (breaker) | 1.30258 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.12345 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.12353 | 0.13 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.96379 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86723 | 1 |
Manapal/WT (break) | 0.72935 | 0.333 |
Manapal/WT (red) | 1.45682 | 0.134 |
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