Expression of 1-1-2.2.10.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.196410.124
27DAP/17DAP1.453990.613
39DAP/27DAP1.017070.899
41DAP/39DAP0.982810.841
42DAP/41DAP0.856421
43DAP/42DAP0.913450.851
47DAP/43DAP1.154660.727
52DAP/47DAP1.465930.403
57DAP/52DAP1.205040.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.893690.188
17DAP/reference0.776220.008
27DAP/reference1.098950.709
39DAP/reference0.913470.121
41DAP/reference0.646770.013
42DAP/reference0.90480.05
43DAP/reference0.98140.708
47DAP/reference1.152240.154
52DAP/reference1.175410.149
57DAP/reference1.566120.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.36150.34
27DAP/17DAP0.867020.475
39DAP/27DAP1.327860.128
41DAP/39DAP0.873240.481
42DAP/41DAP1.155320.622
43DAP/42DAP1.076410.351
47DAP/43DAP0.949780.597
52DAP/47DAP1.007180.959
57DAP/52DAP1.143010.479
57DAP/7DAP1.5793

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.006561
17DAP/reference1.214670.019
27DAP/reference1.303670.026
39DAP/reference1.263440.351
41DAP/reference1.108490.745
42DAP/reference1.388980.076
43DAP/reference1.119390.386
47DAP/reference0.947780.504
52DAP/reference0.980270.523
57DAP/reference1.165910.035

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931060.441
17DAP/reference0.920680.326
27DAP/reference0.609460.053
39DAP/reference0.845070.126
41DAP/reference0.763470.03
42DAP/reference0.713740.024
43DAP/reference0.69320.044
47DAP/reference1.081250.512
52DAP/reference0.772860.025
57DAP/reference0.977840.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.185960.23
17DAP/reference0.951130.537
27DAP/reference1.337410.033
39DAP/reference1.145690.406
41DAP/reference0.964920.512
42DAP/reference1.112510.4
43DAP/reference0.975510.568
47DAP/reference0.862580.139
52DAP/reference1.799240.123
57DAP/reference1.079230.539

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.906260.997
26DAP/20DAP2.012280.141
34DAP/26DAP1.317620.819
51DAP/34DAP1.355050.365
52DAP/51DAP1.023711
53DAP/52DAP0.894290.527
55DAP/53DAP0.917630.698
57DAP/55DAP1.07461
62DAP/57DAP1.068171
68DAP/62DAP1.064880.885
68DAP/14DAP0.727560.069

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.937070.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.158850.176
Mature Green Tomato/Ripe Tomato0.957550.522
Immature Eggplant/Mature Eggplant0.991971
Ripe Pepper/Ripe Tomato0.614170.224
Mature Eggplant/Ripe Tomato0.724470.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.768070.616
1-1-2/M821.000541
12-2/M820.824830.678
12-4/M820.73280.358
1-3/M821.870420.248
2-1-1/M820.45662
2-1/M821.01217
2-6/M820.654880.501
3-2/M82N/AN/A
4-1-1/M820.911061
4-1/M821.16163
4-3-2/M820.74884
4-3/M820.551680.404
5-3/M821.320111
6-2/M820.779160.473
6-3/M822.06165
7-1/M82N/AN/A
7-2/M820.983471
9-3-2/M820.837360.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.889910.243
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.499671
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.134160.426
WT/WTpooled1.00025

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.104451

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.096230.724
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.900881
DC3000/delta hrp 24h0.637260.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.326960.408
DC3000 delta B/DC3000 delta AB1.240080.298

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.202491
Exp 36h1.092730.489
Exp 60h0.916740.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.940481
Var 0h0.925611
Var 12h I row2-row11.209240.544
Var 12h NI row2-row11.193650.34
Var 36h I row2-row11.096650.742
Var 36h NI row2-row10.746780.341
Var 60h I row2-row10.715710.582
Var 60h NI row2-row11.047721
Time course 0hI-0hNI1.027310.867
Time course 12hI-12hNI0.978460.855
Time course 36hI-36hNI1.296920.011
Time course 60hI-60hNI1.100380.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.859470.32
transgenic ySAMdc/azygous control (breaker)1.302580.178
transgenic ySAMdc/azygous control (red)1.123450.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.123530.13

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.963790.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.867231
Manapal/WT (break)0.729350.333
Manapal/WT (red)1.456820.134