Expression of 1-1-2.2.12.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.105940.863
27DAP/17DAP1.047730.919
39DAP/27DAP1.518540.408
41DAP/39DAP0.834820.461
42DAP/41DAP0.932011
43DAP/42DAP0.772410.454
47DAP/43DAP1.042710.943
52DAP/47DAP1.046330.982
57DAP/52DAP1.147070.941

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.089360.303
17DAP/reference1.628260.018
27DAP/reference1.400940.01
39DAP/reference1.13480.077
41DAP/reference1.228910.034
42DAP/reference1.077760.2
43DAP/reference1.01151
47DAP/reference1.071850.627
52DAP/reference1.034070.878
57DAP/reference1.161090.105

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.785460.078
27DAP/17DAP1.218650.453
39DAP/27DAP1.065460.575
41DAP/39DAP1.274060.183
42DAP/41DAP0.911230.407
43DAP/42DAP0.923840.383
47DAP/43DAP1.127420.456
52DAP/47DAP1.298420.34
57DAP/52DAP0.897240.546
57DAP/7DAP0.850171

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.213430.108
17DAP/reference1.213420.028
27DAP/reference1.130510.551
39DAP/reference1.24140.038
41DAP/reference1.084530.43
42DAP/reference0.988160.554
43DAP/reference1.124830.432
47DAP/reference1.381660.019
52DAP/reference1.26820.025
57DAP/reference1.232570.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.004481
17DAP/reference1.73860.007
27DAP/reference1.401720.019
39DAP/reference1.66460.011
41DAP/reference1.174740.344
42DAP/reference1.276940.024
43DAP/reference1.759320.037
47DAP/reference1.82940.009
52DAP/reference1.228940.011
57DAP/reference1.627110.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.127970.072
17DAP/reference1.083130.398
27DAP/reference1.210270.054
39DAP/reference1.078530.437
41DAP/reference1.082320.425
42DAP/reference0.895180.287
43DAP/reference0.94320.384
47DAP/reference0.767620.008
52DAP/reference1.002540.838
57DAP/reference1.106210.2

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.129370.966
26DAP/20DAP0.838450.512
34DAP/26DAP1.198190.114
51DAP/34DAP0.973380.901
52DAP/51DAP1.225880.467
53DAP/52DAP1.193630.166
55DAP/53DAP1.232450.325
57DAP/55DAP1.151310.584
62DAP/57DAP0.931080.871
68DAP/62DAP1.05150.991
68DAP/14DAP1.034641

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.382220.035

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.0410.058
Mature Green Tomato/Ripe Tomato1.747590.299
Immature Eggplant/Mature Eggplant1.487950.055
Ripe Pepper/Ripe Tomato0.944721
Mature Eggplant/Ripe Tomato3.423510.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.409141
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.971281
IL12-4/WTpooled1.578260.367
IL1-4/WTpooled1.04608
WT/WTpooled0.857361

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.27710.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.953241
DC3000/delta hrp 6h1.036461
DC3000/delta hrp 12h0.911761
DC3000/delta hrp 24h0.758530.061

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.918870.436
DC3000 delta B/DC3000 delta AB0.9820.961

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.172591
Exp 36h1.216950.489
Exp 60h1.587630.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004511
Var 0h1.01021
Var 12h I row2-row11.198110.189
Var 12h NI row2-row10.960270.494
Var 36h I row2-row11.048110.742
Var 36h NI row2-row10.926490.743
Var 60h I row2-row10.662740.306
Var 60h NI row2-row10.924430.977
Time course 0hI-0hNI1.017141
Time course 12hI-12hNI1.208690.014
Time course 36hI-36hNI1.246060.007
Time course 60hI-60hNI3.984050.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.532450.267
transgenic ySAMdc/azygous control (breaker)0.795180.173
transgenic ySAMdc/azygous control (red)0.964581

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.245890.08

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.870960.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.329360.14
Manapal/WT (break)1.028741
Manapal/WT (red)2.023240.142