Expression of 1-1-2.2.12.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10594 | 0.863 |
27DAP/17DAP | 1.04773 | 0.919 |
39DAP/27DAP | 1.51854 | 0.408 |
41DAP/39DAP | 0.83482 | 0.461 |
42DAP/41DAP | 0.93201 | 1 |
43DAP/42DAP | 0.77241 | 0.454 |
47DAP/43DAP | 1.04271 | 0.943 |
52DAP/47DAP | 1.04633 | 0.982 |
57DAP/52DAP | 1.14707 | 0.941 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08936 | 0.303 |
17DAP/reference | 1.62826 | 0.018 |
27DAP/reference | 1.40094 | 0.01 |
39DAP/reference | 1.1348 | 0.077 |
41DAP/reference | 1.22891 | 0.034 |
42DAP/reference | 1.07776 | 0.2 |
43DAP/reference | 1.0115 | 1 |
47DAP/reference | 1.07185 | 0.627 |
52DAP/reference | 1.03407 | 0.878 |
57DAP/reference | 1.16109 | 0.105 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78546 | 0.078 |
27DAP/17DAP | 1.21865 | 0.453 |
39DAP/27DAP | 1.06546 | 0.575 |
41DAP/39DAP | 1.27406 | 0.183 |
42DAP/41DAP | 0.91123 | 0.407 |
43DAP/42DAP | 0.92384 | 0.383 |
47DAP/43DAP | 1.12742 | 0.456 |
52DAP/47DAP | 1.29842 | 0.34 |
57DAP/52DAP | 0.89724 | 0.546 |
57DAP/7DAP | 0.85017 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21343 | 0.108 |
17DAP/reference | 1.21342 | 0.028 |
27DAP/reference | 1.13051 | 0.551 |
39DAP/reference | 1.2414 | 0.038 |
41DAP/reference | 1.08453 | 0.43 |
42DAP/reference | 0.98816 | 0.554 |
43DAP/reference | 1.12483 | 0.432 |
47DAP/reference | 1.38166 | 0.019 |
52DAP/reference | 1.2682 | 0.025 |
57DAP/reference | 1.23257 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00448 | 1 |
17DAP/reference | 1.7386 | 0.007 |
27DAP/reference | 1.40172 | 0.019 |
39DAP/reference | 1.6646 | 0.011 |
41DAP/reference | 1.17474 | 0.344 |
42DAP/reference | 1.27694 | 0.024 |
43DAP/reference | 1.75932 | 0.037 |
47DAP/reference | 1.8294 | 0.009 |
52DAP/reference | 1.22894 | 0.011 |
57DAP/reference | 1.62711 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12797 | 0.072 |
17DAP/reference | 1.08313 | 0.398 |
27DAP/reference | 1.21027 | 0.054 |
39DAP/reference | 1.07853 | 0.437 |
41DAP/reference | 1.08232 | 0.425 |
42DAP/reference | 0.89518 | 0.287 |
43DAP/reference | 0.9432 | 0.384 |
47DAP/reference | 0.76762 | 0.008 |
52DAP/reference | 1.00254 | 0.838 |
57DAP/reference | 1.10621 | 0.2 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12937 | 0.966 |
26DAP/20DAP | 0.83845 | 0.512 |
34DAP/26DAP | 1.19819 | 0.114 |
51DAP/34DAP | 0.97338 | 0.901 |
52DAP/51DAP | 1.22588 | 0.467 |
53DAP/52DAP | 1.19363 | 0.166 |
55DAP/53DAP | 1.23245 | 0.325 |
57DAP/55DAP | 1.15131 | 0.584 |
62DAP/57DAP | 0.93108 | 0.871 |
68DAP/62DAP | 1.0515 | 0.991 |
68DAP/14DAP | 1.03464 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.38222 | 0.035 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.041 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.74759 | 0.299 |
Immature Eggplant/Mature Eggplant | 1.48795 | 0.055 |
Ripe Pepper/Ripe Tomato | 0.94472 | 1 |
Mature Eggplant/Ripe Tomato | 3.42351 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.40914 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.97128 | 1 |
IL12-4/WTpooled | 1.57826 | 0.367 |
IL1-4/WTpooled | 1.04608 | |
WT/WTpooled | 0.85736 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.2771 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95324 | 1 |
DC3000/delta hrp 6h | 1.03646 | 1 |
DC3000/delta hrp 12h | 0.91176 | 1 |
DC3000/delta hrp 24h | 0.75853 | 0.061 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.91887 | 0.436 |
DC3000 delta B/DC3000 delta AB | 0.982 | 0.961 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.17259 | 1 |
Exp 36h | 1.21695 | 0.489 |
Exp 60h | 1.58763 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00451 | 1 |
Var 0h | 1.0102 | 1 |
Var 12h I row2-row1 | 1.19811 | 0.189 |
Var 12h NI row2-row1 | 0.96027 | 0.494 |
Var 36h I row2-row1 | 1.04811 | 0.742 |
Var 36h NI row2-row1 | 0.92649 | 0.743 |
Var 60h I row2-row1 | 0.66274 | 0.306 |
Var 60h NI row2-row1 | 0.92443 | 0.977 |
Time course 0hI-0hNI | 1.01714 | 1 |
Time course 12hI-12hNI | 1.20869 | 0.014 |
Time course 36hI-36hNI | 1.24606 | 0.007 |
Time course 60hI-60hNI | 3.98405 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.53245 | 0.267 |
transgenic ySAMdc/azygous control (breaker) | 0.79518 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.96458 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.24589 | 0.08 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87096 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.32936 | 0.14 |
Manapal/WT (break) | 1.02874 | 1 |
Manapal/WT (red) | 2.02324 | 0.142 |
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