Expression of 1-1-2.2.12.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.35179 | 0.281 |
27DAP/17DAP | 0.70757 | 0.272 |
39DAP/27DAP | 0.79785 | 0.425 |
41DAP/39DAP | 1.07217 | 0.676 |
42DAP/41DAP | 1.11184 | 0.876 |
43DAP/42DAP | 0.73297 | 0.551 |
47DAP/43DAP | 0.94363 | 0.768 |
52DAP/47DAP | 1.8952 | 0.262 |
57DAP/52DAP | 0.91279 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99311 | 0.679 |
17DAP/reference | 1.21581 | 0.104 |
27DAP/reference | 1.21135 | 0.121 |
39DAP/reference | 1.43771 | 0.068 |
41DAP/reference | 1.31333 | 0.032 |
42DAP/reference | 1.71391 | 0.001 |
43DAP/reference | 0.94087 | 0.464 |
47DAP/reference | 0.9941 | 0.535 |
52DAP/reference | 0.90642 | 0.319 |
57DAP/reference | 0.89892 | 0.074 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20363 | 0.298 |
27DAP/17DAP | 0.96971 | 0.878 |
39DAP/27DAP | 1.37872 | 0.072 |
41DAP/39DAP | 0.80262 | 0.047 |
42DAP/41DAP | 1.05638 | 0.8 |
43DAP/42DAP | 1.08958 | 0.478 |
47DAP/43DAP | 0.98874 | 0.939 |
52DAP/47DAP | 1.01514 | 0.965 |
57DAP/52DAP | 1.04471 | 0.858 |
57DAP/7DAP | 0.92356 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81769 | 0.071 |
17DAP/reference | 0.94713 | 0.192 |
27DAP/reference | 1.03955 | 0.804 |
39DAP/reference | 1.35468 | 0.024 |
41DAP/reference | 0.89751 | 0.235 |
42DAP/reference | 0.99148 | 0.641 |
43DAP/reference | 0.98186 | 0.527 |
47DAP/reference | 1.05163 | 0.98 |
52DAP/reference | 0.84849 | 0.066 |
57DAP/reference | 0.94453 | 0.291 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95137 | 0.58 |
17DAP/reference | 1.09349 | 0.739 |
27DAP/reference | 1.22639 | 0.497 |
39DAP/reference | 1.34453 | 0.066 |
41DAP/reference | 0.99884 | 0.557 |
42DAP/reference | 1.2196 | 0.086 |
43DAP/reference | 1.50494 | 0.082 |
47DAP/reference | 1.5769 | 0.028 |
52DAP/reference | 1.04598 | 1 |
57DAP/reference | 1.09854 | 0.98 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84661 | 0.074 |
17DAP/reference | 1.14549 | 0.563 |
27DAP/reference | 1.10907 | 0.325 |
39DAP/reference | 0.99154 | 0.643 |
41DAP/reference | 1.16052 | 0.257 |
42DAP/reference | 1.23352 | 0.082 |
43DAP/reference | 1.05248 | 0.935 |
47DAP/reference | 1.1095 | 0.73 |
52DAP/reference | 0.89241 | 0.303 |
57DAP/reference | 1.39578 | 0.061 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10588 | 0.966 |
26DAP/20DAP | 0.87107 | 0.512 |
34DAP/26DAP | 1.16008 | 1 |
51DAP/34DAP | 0.86697 | 0.458 |
52DAP/51DAP | 0.77798 | 1 |
53DAP/52DAP | 0.85382 | 0.342 |
55DAP/53DAP | 1.76722 | 0.046 |
57DAP/55DAP | 0.83334 | 0.37 |
62DAP/57DAP | 0.97181 | 0.994 |
68DAP/62DAP | 1.24343 | 0.202 |
68DAP/14DAP | 0.85123 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.1495 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.32136 | 0.036 |
Immature Eggplant/Mature Eggplant | 0.58422 | 0.066 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 3.49058 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.1374 | 1 |
1-1-2/M82 | 1.07391 | 1 |
12-2/M82 | 1.39018 | |
12-4/M82 | 0.84293 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.85685 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.62552 | |
4-3-2/M82 | 0.84833 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.99693 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.01731 | 1 |
9-3-2/M82 | 1.16213 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.5004 | 0.383 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.98034 | 1 |
IL12-4/WTpooled | 0.62723 | 0.581 |
IL1-4/WTpooled | 0.85948 | 0.562 |
WT/WTpooled | 0.99979 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.67802 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05918 | 0.875 |
DC3000/delta hrp 6h | 1.22793 | 0.978 |
DC3000/delta hrp 12h | 1.48789 | 1 |
DC3000/delta hrp 24h | 0.91395 | 0.513 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.75356 | 0.035 |
DC3000 delta B/DC3000 delta AB | 0.60798 | 0.033 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.21428 | 0.228 |
Exp 36h | 0.70496 | 0.434 |
Exp 60h | 0.76279 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01662 | 1 |
Var 0h | 1.11477 | 0.421 |
Var 12h I row2-row1 | 0.70922 | 0.357 |
Var 12h NI row2-row1 | 1.23009 | 0.34 |
Var 36h I row2-row1 | 0.8998 | 1 |
Var 36h NI row2-row1 | 1.06297 | 1 |
Var 60h I row2-row1 | 1.32896 | 0.562 |
Var 60h NI row2-row1 | 0.82577 | 0.818 |
Time course 0hI-0hNI | 1.14328 | 0.451 |
Time course 12hI-12hNI | 0.88701 | 0.374 |
Time course 36hI-36hNI | 0.88186 | 0.241 |
Time course 60hI-60hNI | 0.41549 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.67133 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 0.92999 | 1 |
transgenic ySAMdc/azygous control (red) | 0.84068 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97408 | 0.181 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.15395 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.49119 | 1 |
Manapal/WT (break) | 0.54949 | 1 |
Manapal/WT (red) | 1.02585 | 1 |
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