Expression of 1-1-2.2.12.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.351790.281
27DAP/17DAP0.707570.272
39DAP/27DAP0.797850.425
41DAP/39DAP1.072170.676
42DAP/41DAP1.111840.876
43DAP/42DAP0.732970.551
47DAP/43DAP0.943630.768
52DAP/47DAP1.89520.262
57DAP/52DAP0.912790.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.993110.679
17DAP/reference1.215810.104
27DAP/reference1.211350.121
39DAP/reference1.437710.068
41DAP/reference1.313330.032
42DAP/reference1.713910.001
43DAP/reference0.940870.464
47DAP/reference0.99410.535
52DAP/reference0.906420.319
57DAP/reference0.898920.074

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.203630.298
27DAP/17DAP0.969710.878
39DAP/27DAP1.378720.072
41DAP/39DAP0.802620.047
42DAP/41DAP1.056380.8
43DAP/42DAP1.089580.478
47DAP/43DAP0.988740.939
52DAP/47DAP1.015140.965
57DAP/52DAP1.044710.858
57DAP/7DAP0.923561

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.817690.071
17DAP/reference0.947130.192
27DAP/reference1.039550.804
39DAP/reference1.354680.024
41DAP/reference0.897510.235
42DAP/reference0.991480.641
43DAP/reference0.981860.527
47DAP/reference1.051630.98
52DAP/reference0.848490.066
57DAP/reference0.944530.291

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.951370.58
17DAP/reference1.093490.739
27DAP/reference1.226390.497
39DAP/reference1.344530.066
41DAP/reference0.998840.557
42DAP/reference1.21960.086
43DAP/reference1.504940.082
47DAP/reference1.57690.028
52DAP/reference1.045981
57DAP/reference1.098540.98

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.846610.074
17DAP/reference1.145490.563
27DAP/reference1.109070.325
39DAP/reference0.991540.643
41DAP/reference1.160520.257
42DAP/reference1.233520.082
43DAP/reference1.052480.935
47DAP/reference1.10950.73
52DAP/reference0.892410.303
57DAP/reference1.395780.061

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.105880.966
26DAP/20DAP0.871070.512
34DAP/26DAP1.160081
51DAP/34DAP0.866970.458
52DAP/51DAP0.777981
53DAP/52DAP0.853820.342
55DAP/53DAP1.767220.046
57DAP/55DAP0.833340.37
62DAP/57DAP0.971810.994
68DAP/62DAP1.243430.202
68DAP/14DAP0.85123

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.14950.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.321360.036
Immature Eggplant/Mature Eggplant0.584220.066
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato3.490580.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.13741
1-1-2/M821.073911
12-2/M821.39018
12-4/M820.842931
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.85685
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.62552
4-3-2/M820.848331
4-3/M82N/AN/A
5-3/M820.996931
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.017311
9-3-2/M821.16213

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.50040.383
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.980341
IL12-4/WTpooled0.627230.581
IL1-4/WTpooled0.859480.562
WT/WTpooled0.999791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.678020.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.059180.875
DC3000/delta hrp 6h1.227930.978
DC3000/delta hrp 12h1.487891
DC3000/delta hrp 24h0.913950.513

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.753560.035
DC3000 delta B/DC3000 delta AB0.607980.033

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.214280.228
Exp 36h0.704960.434
Exp 60h0.762790.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.016621
Var 0h1.114770.421
Var 12h I row2-row10.709220.357
Var 12h NI row2-row11.230090.34
Var 36h I row2-row10.89981
Var 36h NI row2-row11.062971
Var 60h I row2-row11.328960.562
Var 60h NI row2-row10.825770.818
Time course 0hI-0hNI1.143280.451
Time course 12hI-12hNI0.887010.374
Time course 36hI-36hNI0.881860.241
Time course 60hI-60hNI0.415490.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.671330.362
transgenic ySAMdc/azygous control (breaker)0.929991
transgenic ySAMdc/azygous control (red)0.840681

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.974080.181

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.153950.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.491191
Manapal/WT (break)0.549491
Manapal/WT (red)1.025851