Expression of 1-1-2.2.13.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13097 | 0.646 |
27DAP/17DAP | 1.04435 | 0.905 |
39DAP/27DAP | 0.8753 | 0.435 |
41DAP/39DAP | 1.16406 | 0.359 |
42DAP/41DAP | 0.86934 | 0.774 |
43DAP/42DAP | 1.09496 | 0.933 |
47DAP/43DAP | 1.05747 | 0.727 |
52DAP/47DAP | 0.91713 | 0.74 |
57DAP/52DAP | 1.01699 | 0.987 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00872 | 0.994 |
17DAP/reference | 1.01323 | 0.606 |
27DAP/reference | 1.01545 | 0.782 |
39DAP/reference | 0.96468 | 0.404 |
41DAP/reference | 1.01337 | 0.91 |
42DAP/reference | 0.93944 | 0.145 |
43DAP/reference | 1.02074 | 0.596 |
47DAP/reference | 0.99443 | 0.568 |
52DAP/reference | 0.97945 | 0.504 |
57DAP/reference | 1.09009 | 0.31 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97942 | 0.697 |
27DAP/17DAP | 0.99255 | 0.919 |
39DAP/27DAP | 1.00763 | 0.832 |
41DAP/39DAP | 1.05517 | 0.674 |
42DAP/41DAP | 0.998 | 0.92 |
43DAP/42DAP | 0.98763 | 0.729 |
47DAP/43DAP | 1.00287 | 0.973 |
52DAP/47DAP | 0.9772 | 0.848 |
57DAP/52DAP | 0.99007 | 0.828 |
57DAP/7DAP | 0.92953 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0175 | 0.91 |
17DAP/reference | N/A | N/A |
27DAP/reference | 1.07025 | 0.041 |
39DAP/reference | 1.1142 | 0.044 |
41DAP/reference | 1.09151 | 0.141 |
42DAP/reference | 1.12074 | 0.059 |
43DAP/reference | 1.14405 | |
47DAP/reference | 1.08527 | 0.504 |
52DAP/reference | 1.06451 | 0.428 |
57DAP/reference | 1.12969 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99297 | 0.869 |
17DAP/reference | 0.97757 | 0.399 |
27DAP/reference | 0.96406 | 0.327 |
39DAP/reference | 0.97629 | 0.314 |
41DAP/reference | 1.13448 | 0.382 |
42DAP/reference | 1.04416 | 0.68 |
43DAP/reference | 0.98688 | 0.692 |
47DAP/reference | 1.05063 | 0.087 |
52DAP/reference | 0.95181 | 0.143 |
57DAP/reference | 0.96136 | 0.278 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04886 | 0.616 |
17DAP/reference | 1.00325 | 1 |
27DAP/reference | 1.00972 | 1 |
39DAP/reference | 1.04184 | 0.496 |
41DAP/reference | 1.07604 | 0.213 |
42DAP/reference | 1.06788 | 0.716 |
43DAP/reference | 0.96531 | 0.503 |
47DAP/reference | 1.00233 | 1 |
52DAP/reference | 1.03611 | 0.801 |
57DAP/reference | 1.01016 | 0.954 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94928 | 0.207 |
26DAP/20DAP | 1.12312 | 0.567 |
34DAP/26DAP | 1.0746 | 1 |
51DAP/34DAP | 0.97536 | 0.799 |
52DAP/51DAP | 1.04143 | 0.708 |
53DAP/52DAP | 1.02273 | 0.91 |
55DAP/53DAP | 1.01257 | 0.976 |
57DAP/55DAP | 1.24211 | 0.818 |
62DAP/57DAP | 0.98854 | 1 |
68DAP/62DAP | 1.12859 | 0.7 |
68DAP/14DAP | 1.17829 | 0.384 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03147 | 0.7 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.89975 | 0.481 |
Mature Green Tomato/Ripe Tomato | 0.86288 | 0.411 |
Immature Eggplant/Mature Eggplant | 0.99527 | 1 |
Ripe Pepper/Ripe Tomato | 1.34089 | 1 |
Mature Eggplant/Ripe Tomato | 1.88809 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.88976 | 0.673 |
1-1-2/M82 | 0.99563 | 1 |
12-2/M82 | 0.95082 | 0.955 |
12-4/M82 | 0.88702 | 1 |
1-3/M82 | 1.05196 | 1 |
2-1-1/M82 | 0.8175 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.87446 | 1 |
3-2/M82 | 0.89715 | 1 |
4-1-1/M82 | 0.9988 | 1 |
4-1/M82 | 0.8536 | 0.737 |
4-3-2/M82 | 0.87096 | 1 |
4-3/M82 | 0.87151 | 0.611 |
5-3/M82 | 1.00169 | 1 |
6-2/M82 | 1.06869 | 1 |
6-3/M82 | 0.96582 | 1 |
7-1/M82 | 0.98799 | 1 |
7-2/M82 | 0.87902 | 0.486 |
9-3-2/M82 | 0.87159 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.56813 | |
IL2-6/WTpooled | 1.40061 | 0.456 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.15384 | 1 |
IL12-4/WTpooled | 1.21566 | 0.595 |
IL1-4/WTpooled | 0.98598 | 1 |
WT/WTpooled | 1.03792 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.87569 | 0.226 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0358 | 0.914 |
DC3000/delta hrp 6h | 1.50965 | 1 |
DC3000/delta hrp 12h | 1.00793 | 1 |
DC3000/delta hrp 24h | 1.06454 | 0.604 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.40732 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.3244 | 0.096 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.06012 | 1 |
Exp 60h | 0.99953 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01958 | 1 |
Var 0h | 0.92614 | 0.933 |
Var 12h I row2-row1 | 1.17227 | 0.228 |
Var 12h NI row2-row1 | 0.96791 | 0.82 |
Var 36h I row2-row1 | 0.76814 | 0.805 |
Var 36h NI row2-row1 | 0.86724 | 0.549 |
Var 60h I row2-row1 | 1.10467 | 1 |
Var 60h NI row2-row1 | 1.01361 | 1 |
Time course 0hI-0hNI | 1.03612 | 1 |
Time course 12hI-12hNI | 1.06745 | 0.741 |
Time course 36hI-36hNI | 0.99447 | 0.718 |
Time course 60hI-60hNI | 1.49966 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.85209 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 1.44797 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.22567 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97255 | 0.149 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.07627 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0348 | 1 |
Manapal/WT (break) | 0.98816 | 1 |
Manapal/WT (red) | 1.10688 | 1 |
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