Expression of 1-1-2.2.13.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.130970.646
27DAP/17DAP1.044350.905
39DAP/27DAP0.87530.435
41DAP/39DAP1.164060.359
42DAP/41DAP0.869340.774
43DAP/42DAP1.094960.933
47DAP/43DAP1.057470.727
52DAP/47DAP0.917130.74
57DAP/52DAP1.016990.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.008720.994
17DAP/reference1.013230.606
27DAP/reference1.015450.782
39DAP/reference0.964680.404
41DAP/reference1.013370.91
42DAP/reference0.939440.145
43DAP/reference1.020740.596
47DAP/reference0.994430.568
52DAP/reference0.979450.504
57DAP/reference1.090090.31

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.979420.697
27DAP/17DAP0.992550.919
39DAP/27DAP1.007630.832
41DAP/39DAP1.055170.674
42DAP/41DAP0.9980.92
43DAP/42DAP0.987630.729
47DAP/43DAP1.002870.973
52DAP/47DAP0.97720.848
57DAP/52DAP0.990070.828
57DAP/7DAP0.929531

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01750.91
17DAP/referenceN/AN/A
27DAP/reference1.070250.041
39DAP/reference1.11420.044
41DAP/reference1.091510.141
42DAP/reference1.120740.059
43DAP/reference1.14405
47DAP/reference1.085270.504
52DAP/reference1.064510.428
57DAP/reference1.129690.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992970.869
17DAP/reference0.977570.399
27DAP/reference0.964060.327
39DAP/reference0.976290.314
41DAP/reference1.134480.382
42DAP/reference1.044160.68
43DAP/reference0.986880.692
47DAP/reference1.050630.087
52DAP/reference0.951810.143
57DAP/reference0.961360.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.048860.616
17DAP/reference1.003251
27DAP/reference1.009721
39DAP/reference1.041840.496
41DAP/reference1.076040.213
42DAP/reference1.067880.716
43DAP/reference0.965310.503
47DAP/reference1.002331
52DAP/reference1.036110.801
57DAP/reference1.010160.954

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.949280.207
26DAP/20DAP1.123120.567
34DAP/26DAP1.07461
51DAP/34DAP0.975360.799
52DAP/51DAP1.041430.708
53DAP/52DAP1.022730.91
55DAP/53DAP1.012570.976
57DAP/55DAP1.242110.818
62DAP/57DAP0.988541
68DAP/62DAP1.128590.7
68DAP/14DAP1.178290.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.031470.7

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.899750.481
Mature Green Tomato/Ripe Tomato0.862880.411
Immature Eggplant/Mature Eggplant0.995271
Ripe Pepper/Ripe Tomato1.340891
Mature Eggplant/Ripe Tomato1.888090.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.889760.673
1-1-2/M820.995631
12-2/M820.950820.955
12-4/M820.887021
1-3/M821.051961
2-1-1/M820.81750.465
2-1/M82N/AN/A
2-6/M820.874461
3-2/M820.897151
4-1-1/M820.99881
4-1/M820.85360.737
4-3-2/M820.870961
4-3/M820.871510.611
5-3/M821.001691
6-2/M821.068691
6-3/M820.965821
7-1/M820.987991
7-2/M820.879020.486
9-3-2/M820.871590.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.56813
IL2-6/WTpooled1.400610.456
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.153841
IL12-4/WTpooled1.215660.595
IL1-4/WTpooled0.985981
WT/WTpooled1.037921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.875690.226

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.03580.914
DC3000/delta hrp 6h1.509651
DC3000/delta hrp 12h1.007931
DC3000/delta hrp 24h1.064540.604

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.407320.042
DC3000 delta B/DC3000 delta AB1.32440.096

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.060121
Exp 60h0.999531

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.019581
Var 0h0.926140.933
Var 12h I row2-row11.172270.228
Var 12h NI row2-row10.967910.82
Var 36h I row2-row10.768140.805
Var 36h NI row2-row10.867240.549
Var 60h I row2-row11.104671
Var 60h NI row2-row11.013611
Time course 0hI-0hNI1.036121
Time course 12hI-12hNI1.067450.741
Time course 36hI-36hNI0.994470.718
Time course 60hI-60hNI1.499660.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.852090.314
transgenic ySAMdc/azygous control (breaker)1.447970.248
transgenic ySAMdc/azygous control (red)1.225670.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.972550.149

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.076271

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.03481
Manapal/WT (break)0.988161
Manapal/WT (red)1.106881