Expression of 1-1-2.2.14.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.965610.752
27DAP/17DAP0.806390.43
39DAP/27DAP1.332560.985
41DAP/39DAP1.264420.328
42DAP/41DAP1.394840.514
43DAP/42DAP1.879320.563
47DAP/43DAP0.916530.699
52DAP/47DAP0.556430.069
57DAP/52DAP0.830680.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.202890.007
17DAP/reference1.460110.096
27DAP/reference1.38070.087
39DAP/reference1.06330.857
41DAP/reference1.022041
42DAP/reference1.357350.001
43DAP/reference1.071450.269
47DAP/reference0.975130.418
52DAP/reference0.823770.115
57DAP/reference0.977620.456

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.940190.496
27DAP/17DAP0.868250.508
39DAP/27DAP0.877330.243
41DAP/39DAP0.837160.372
42DAP/41DAP1.069780.753
43DAP/42DAP1.111770.134
47DAP/43DAP0.95520.774
52DAP/47DAP0.99210.947
57DAP/52DAP0.879130.545
57DAP/7DAP1.029641

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.63920.032
17DAP/reference1.063580.477
27DAP/reference1.199220.041
39DAP/reference1.592990.008
41DAP/reference1.384550.017
42DAP/reference1.827230.014
43DAP/reference1.737980.007
47DAP/reference1.505640.118
52DAP/reference1.388260.011
57DAP/reference1.063050.654

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.476860.125
17DAP/reference1.845770.007
27DAP/reference1.603890.017
39DAP/reference1.055061
41DAP/reference0.978890.451
42DAP/reference1.408270.012
43DAP/reference0.920170.32
47DAP/reference1.377740.01
52DAP/reference0.707820.007
57DAP/reference0.906480.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.163610.036
17DAP/reference1.052210.887
27DAP/reference0.960530.442
39DAP/reference1.005331
41DAP/reference0.925190.107
42DAP/reference2.115480.02
43DAP/reference1.775820.013
47DAP/reference0.827220.072
52DAP/reference1.906980.07
57DAP/reference1.066450.682

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.12310.966
26DAP/20DAP1.724840.099
34DAP/26DAP0.695340.076
51DAP/34DAP0.569850.174
52DAP/51DAP0.950341
53DAP/52DAP1.031041
55DAP/53DAP1.226450.196
57DAP/55DAP1.27980.249
62DAP/57DAP0.999671
68DAP/62DAP1.094460.956
68DAP/14DAP0.741250.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.447510.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.288580.058
Mature Green Tomato/Ripe Tomato0.724230.086
Immature Eggplant/Mature Eggplant0.967130.594
Ripe Pepper/Ripe Tomato1.505081
Mature Eggplant/Ripe Tomato1.303541

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.06478
1-1-2/M821.570381
12-2/M820.941011
12-4/M821.482951
1-3/M822.36059
2-1-1/M821.330120.764
2-1/M821.145260.271
2-6/M821.405210.695
3-2/M821.72499
4-1-1/M820.848271
4-1/M821.201351
4-3-2/M822.136330.253
4-3/M821.397051
5-3/M820.748980.642
6-2/M82N/AN/A
6-3/M820.55724
7-1/M821.12084
7-2/M821.331961
9-3-2/M821.39051

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.103640.788
IL7-5/WTpooled1.05709
IL7-3/WTpooled0.799290.418
IL12-4/WTpooled1.093490.891
IL1-4/WTpooled1.80306
WT/WTpooled1.025651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.887240.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.016431
DC3000/delta hrp 6h1.01240.95
DC3000/delta hrp 12h1.045861
DC3000/delta hrp 24h0.917640.523

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.135850.042
DC3000 delta B/DC3000 delta AB0.84510.326

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.962781
Exp 36h0.765420.456
Exp 60h0.653270.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.033031
Var 0h0.789220.457
Var 12h I row2-row11.159230.379
Var 12h NI row2-row10.902830.403
Var 36h I row2-row10.873370.805
Var 36h NI row2-row11.070941
Var 60h I row2-row13.124820.562
Var 60h NI row2-row10.944840.932
Time course 0hI-0hNI1.080880.603
Time course 12hI-12hNI0.972760.698
Time course 36hI-36hNI0.777130.029
Time course 60hI-60hNI0.721980.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.897460.338
transgenic ySAMdc/azygous control (breaker)1.750590.248
transgenic ySAMdc/azygous control (red)1.397550.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.026090.766

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.099961

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.047281
Manapal/WT (break)1.121211
Manapal/WT (red)0.971070.863