Expression of 1-1-2.2.14.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96561 | 0.752 |
27DAP/17DAP | 0.80639 | 0.43 |
39DAP/27DAP | 1.33256 | 0.985 |
41DAP/39DAP | 1.26442 | 0.328 |
42DAP/41DAP | 1.39484 | 0.514 |
43DAP/42DAP | 1.87932 | 0.563 |
47DAP/43DAP | 0.91653 | 0.699 |
52DAP/47DAP | 0.55643 | 0.069 |
57DAP/52DAP | 0.83068 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.20289 | 0.007 |
17DAP/reference | 1.46011 | 0.096 |
27DAP/reference | 1.3807 | 0.087 |
39DAP/reference | 1.0633 | 0.857 |
41DAP/reference | 1.02204 | 1 |
42DAP/reference | 1.35735 | 0.001 |
43DAP/reference | 1.07145 | 0.269 |
47DAP/reference | 0.97513 | 0.418 |
52DAP/reference | 0.82377 | 0.115 |
57DAP/reference | 0.97762 | 0.456 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94019 | 0.496 |
27DAP/17DAP | 0.86825 | 0.508 |
39DAP/27DAP | 0.87733 | 0.243 |
41DAP/39DAP | 0.83716 | 0.372 |
42DAP/41DAP | 1.06978 | 0.753 |
43DAP/42DAP | 1.11177 | 0.134 |
47DAP/43DAP | 0.9552 | 0.774 |
52DAP/47DAP | 0.9921 | 0.947 |
57DAP/52DAP | 0.87913 | 0.545 |
57DAP/7DAP | 1.02964 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.6392 | 0.032 |
17DAP/reference | 1.06358 | 0.477 |
27DAP/reference | 1.19922 | 0.041 |
39DAP/reference | 1.59299 | 0.008 |
41DAP/reference | 1.38455 | 0.017 |
42DAP/reference | 1.82723 | 0.014 |
43DAP/reference | 1.73798 | 0.007 |
47DAP/reference | 1.50564 | 0.118 |
52DAP/reference | 1.38826 | 0.011 |
57DAP/reference | 1.06305 | 0.654 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47686 | 0.125 |
17DAP/reference | 1.84577 | 0.007 |
27DAP/reference | 1.60389 | 0.017 |
39DAP/reference | 1.05506 | 1 |
41DAP/reference | 0.97889 | 0.451 |
42DAP/reference | 1.40827 | 0.012 |
43DAP/reference | 0.92017 | 0.32 |
47DAP/reference | 1.37774 | 0.01 |
52DAP/reference | 0.70782 | 0.007 |
57DAP/reference | 0.90648 | 0.278 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16361 | 0.036 |
17DAP/reference | 1.05221 | 0.887 |
27DAP/reference | 0.96053 | 0.442 |
39DAP/reference | 1.00533 | 1 |
41DAP/reference | 0.92519 | 0.107 |
42DAP/reference | 2.11548 | 0.02 |
43DAP/reference | 1.77582 | 0.013 |
47DAP/reference | 0.82722 | 0.072 |
52DAP/reference | 1.90698 | 0.07 |
57DAP/reference | 1.06645 | 0.682 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1231 | 0.966 |
26DAP/20DAP | 1.72484 | 0.099 |
34DAP/26DAP | 0.69534 | 0.076 |
51DAP/34DAP | 0.56985 | 0.174 |
52DAP/51DAP | 0.95034 | 1 |
53DAP/52DAP | 1.03104 | 1 |
55DAP/53DAP | 1.22645 | 0.196 |
57DAP/55DAP | 1.2798 | 0.249 |
62DAP/57DAP | 0.99967 | 1 |
68DAP/62DAP | 1.09446 | 0.956 |
68DAP/14DAP | 0.74125 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.44751 | 0.017 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.28858 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.72423 | 0.086 |
Immature Eggplant/Mature Eggplant | 0.96713 | 0.594 |
Ripe Pepper/Ripe Tomato | 1.50508 | 1 |
Mature Eggplant/Ripe Tomato | 1.30354 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06478 | |
1-1-2/M82 | 1.57038 | 1 |
12-2/M82 | 0.94101 | 1 |
12-4/M82 | 1.48295 | 1 |
1-3/M82 | 2.36059 | |
2-1-1/M82 | 1.33012 | 0.764 |
2-1/M82 | 1.14526 | 0.271 |
2-6/M82 | 1.40521 | 0.695 |
3-2/M82 | 1.72499 | |
4-1-1/M82 | 0.84827 | 1 |
4-1/M82 | 1.20135 | 1 |
4-3-2/M82 | 2.13633 | 0.253 |
4-3/M82 | 1.39705 | 1 |
5-3/M82 | 0.74898 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.55724 | |
7-1/M82 | 1.12084 | |
7-2/M82 | 1.33196 | 1 |
9-3-2/M82 | 1.39051 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.10364 | 0.788 |
IL7-5/WTpooled | 1.05709 | |
IL7-3/WTpooled | 0.79929 | 0.418 |
IL12-4/WTpooled | 1.09349 | 0.891 |
IL1-4/WTpooled | 1.80306 | |
WT/WTpooled | 1.02565 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.88724 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01643 | 1 |
DC3000/delta hrp 6h | 1.0124 | 0.95 |
DC3000/delta hrp 12h | 1.04586 | 1 |
DC3000/delta hrp 24h | 0.91764 | 0.523 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.13585 | 0.042 |
DC3000 delta B/DC3000 delta AB | 0.8451 | 0.326 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96278 | 1 |
Exp 36h | 0.76542 | 0.456 |
Exp 60h | 0.65327 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03303 | 1 |
Var 0h | 0.78922 | 0.457 |
Var 12h I row2-row1 | 1.15923 | 0.379 |
Var 12h NI row2-row1 | 0.90283 | 0.403 |
Var 36h I row2-row1 | 0.87337 | 0.805 |
Var 36h NI row2-row1 | 1.07094 | 1 |
Var 60h I row2-row1 | 3.12482 | 0.562 |
Var 60h NI row2-row1 | 0.94484 | 0.932 |
Time course 0hI-0hNI | 1.08088 | 0.603 |
Time course 12hI-12hNI | 0.97276 | 0.698 |
Time course 36hI-36hNI | 0.77713 | 0.029 |
Time course 60hI-60hNI | 0.72198 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89746 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 1.75059 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.39755 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02609 | 0.766 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.09996 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.04728 | 1 |
Manapal/WT (break) | 1.12121 | 1 |
Manapal/WT (red) | 0.97107 | 0.863 |
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