Expression of 1-1-2.2.14.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04406 | 0.863 |
27DAP/17DAP | 1.041 | 1 |
39DAP/27DAP | 0.80815 | 0.378 |
41DAP/39DAP | 1.28069 | 0.38 |
42DAP/41DAP | 1.25971 | 0.712 |
43DAP/42DAP | 1.211 | 0.698 |
47DAP/43DAP | 1.06542 | 0.965 |
52DAP/47DAP | 1.08649 | 0.913 |
57DAP/52DAP | 0.88785 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10489 | 0.089 |
17DAP/reference | 0.929 | 0.393 |
27DAP/reference | 0.97625 | 0.497 |
39DAP/reference | 0.98484 | 0.72 |
41DAP/reference | 0.97888 | 0.667 |
42DAP/reference | 0.95984 | 0.196 |
43DAP/reference | 1.02487 | 0.495 |
47DAP/reference | 1.00648 | 1 |
52DAP/reference | 0.97848 | 0.35 |
57DAP/reference | 0.92172 | 0.054 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99276 | 0.826 |
27DAP/17DAP | 0.96235 | 0.854 |
39DAP/27DAP | 1.03574 | 0.685 |
41DAP/39DAP | 1.00685 | 1 |
42DAP/41DAP | 1.01089 | 1 |
43DAP/42DAP | 0.9947 | 0.991 |
47DAP/43DAP | 1.07218 | 0.276 |
52DAP/47DAP | 1.01878 | 0.927 |
57DAP/52DAP | 1.01934 | 0.933 |
57DAP/7DAP | 1.05458 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99028 | 0.613 |
17DAP/reference | 0.98163 | 0.338 |
27DAP/reference | 0.98073 | 0.303 |
39DAP/reference | 1.00793 | 0.865 |
41DAP/reference | 1.01027 | 0.891 |
42DAP/reference | 0.97679 | 0.415 |
43DAP/reference | 0.99646 | 0.727 |
47DAP/reference | 0.934 | 0.293 |
52DAP/reference | 1.02034 | 0.636 |
57DAP/reference | 0.92741 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04646 | 0.495 |
17DAP/reference | 1.02283 | 0.406 |
27DAP/reference | 1.01953 | 0.961 |
39DAP/reference | 0.9654 | 0.348 |
41DAP/reference | 0.94167 | 0.268 |
42DAP/reference | 0.94404 | 0.121 |
43DAP/reference | 0.97959 | 0.62 |
47DAP/reference | 0.91779 | 0.053 |
52DAP/reference | 0.98217 | 0.407 |
57DAP/reference | 1.06163 | 0.353 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03253 | 0.518 |
17DAP/reference | 0.9706 | 0.462 |
27DAP/reference | 1.0248 | 0.373 |
39DAP/reference | 0.96031 | 0.222 |
41DAP/reference | 1.03311 | 0.537 |
42DAP/reference | 1.02738 | 0.68 |
43DAP/reference | 0.9703 | 0.294 |
47DAP/reference | 0.96215 | 0.145 |
52DAP/reference | 0.96083 | 0.464 |
57DAP/reference | 0.85307 | 0.042 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94651 | 1 |
26DAP/20DAP | 0.96054 | 1 |
34DAP/26DAP | 0.98574 | 1 |
51DAP/34DAP | 1.06173 | 0.445 |
52DAP/51DAP | 1.06488 | 0.492 |
53DAP/52DAP | 0.99377 | 0.978 |
55DAP/53DAP | 1.01081 | 1 |
57DAP/55DAP | 1.0739 | 0.61 |
62DAP/57DAP | 0.98873 | 1 |
68DAP/62DAP | 0.93756 | 0.579 |
68DAP/14DAP | 1.11354 | 0.311 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85892 | 0.072 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.61616 | 0.141 |
Mature Green Tomato/Ripe Tomato | 0.8801 | 0.317 |
Immature Eggplant/Mature Eggplant | 0.79046 | 0.063 |
Ripe Pepper/Ripe Tomato | 4.48802 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.99298 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05833 | 0.877 |
1-1-2/M82 | 0.87382 | 0.958 |
12-2/M82 | 1.11996 | |
12-4/M82 | 0.90316 | 1 |
1-3/M82 | 0.99856 | 1 |
2-1-1/M82 | 0.93185 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.09401 | 0.695 |
3-2/M82 | 0.99588 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.03891 | 1 |
4-3-2/M82 | 0.98556 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.97612 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.33141 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.05002 | 0.318 |
9-3-2/M82 | 0.85196 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.05087 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.1693 | 1 |
IL12-4/WTpooled | 1.1291 | 0.673 |
IL1-4/WTpooled | 0.92105 | 0.699 |
WT/WTpooled | 1.031 | 0.785 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.8768 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93549 | 1 |
DC3000/delta hrp 6h | 0.77659 | 0.808 |
DC3000/delta hrp 12h | 0.97133 | 1 |
DC3000/delta hrp 24h | 1.2497 | 0.347 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04796 | 0.313 |
DC3000 delta B/DC3000 delta AB | 0.91161 | 0.203 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.7865 | 0.328 |
Exp 36h | 0.53087 | 0.406 |
Exp 60h | 0.54889 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02254 | 1 |
Var 0h | 0.77794 | 0.933 |
Var 12h I row2-row1 | 0.95005 | 0.467 |
Var 12h NI row2-row1 | 0.97276 | 0.906 |
Var 36h I row2-row1 | 0.98187 | 1 |
Var 36h NI row2-row1 | 1.14623 | 1 |
Var 60h I row2-row1 | 1.47804 | 0.562 |
Var 60h NI row2-row1 | 1.05127 | 0.904 |
Time course 0hI-0hNI | 0.94386 | 0.452 |
Time course 12hI-12hNI | 1.00892 | 0.88 |
Time course 36hI-36hNI | 0.92088 | 0.159 |
Time course 60hI-60hNI | 0.57508 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03333 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.79567 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.21289 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99863 | 0.858 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.17234 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.32024 | 0.093 |
Manapal/WT (break) | 1.92953 | 0.14 |
Manapal/WT (red) | 1.55637 | 0.142 |
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