Expression of 1-1-2.2.17.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.5977 | 0.083 |
27DAP/17DAP | 1.139 | 0.849 |
39DAP/27DAP | 0.87975 | 0.544 |
41DAP/39DAP | 0.95454 | 0.73 |
42DAP/41DAP | 1.43252 | 0.527 |
43DAP/42DAP | 1.01379 | 0.937 |
47DAP/43DAP | 1.19462 | 0.873 |
52DAP/47DAP | 0.9937 | 0.74 |
57DAP/52DAP | 1.3892 | 0.878 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98077 | 0.513 |
17DAP/reference | 1.00349 | 0.843 |
27DAP/reference | 1.00714 | 1 |
39DAP/reference | 1.02709 | 0.534 |
41DAP/reference | 1.05548 | 0.365 |
42DAP/reference | 0.91597 | 0.016 |
43DAP/reference | 0.98387 | 0.728 |
47DAP/reference | 0.97364 | 0.345 |
52DAP/reference | 0.88943 | 0.06 |
57DAP/reference | 0.89436 | 0.096 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.71787 | 0.105 |
27DAP/17DAP | 1.52526 | 0.187 |
39DAP/27DAP | 0.99745 | 1 |
41DAP/39DAP | 0.89885 | 0.923 |
42DAP/41DAP | 1.01602 | 0.924 |
43DAP/42DAP | 1.14537 | 0.103 |
47DAP/43DAP | 1.07734 | 0.822 |
52DAP/47DAP | 1.5264 | 0.308 |
57DAP/52DAP | 1.11426 | 0.851 |
57DAP/7DAP | 0.89755 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88978 | 0.361 |
17DAP/reference | 1.00396 | 1 |
27DAP/reference | 1.11423 | 0.06 |
39DAP/reference | 0.85717 | 0.146 |
41DAP/reference | 1.11301 | 0.303 |
42DAP/reference | 0.88613 | 0.235 |
43DAP/reference | 1.24682 | 0.2 |
47DAP/reference | 1.03912 | 1 |
52DAP/reference | 0.92169 | 0.061 |
57DAP/reference | 1.13243 | 0.232 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06166 | 0.597 |
17DAP/reference | 0.98688 | 0.693 |
27DAP/reference | 0.89429 | 0.134 |
39DAP/reference | 0.89409 | 0.06 |
41DAP/reference | 0.87896 | 0.085 |
42DAP/reference | 0.79092 | 0.011 |
43DAP/reference | 1.04982 | 0.515 |
47DAP/reference | 0.89314 | 0.123 |
52DAP/reference | 1.01443 | 0.988 |
57DAP/reference | 1.08257 | 0.324 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97341 | 0.526 |
17DAP/reference | 0.95003 | 0.433 |
27DAP/reference | 1.07519 | 0.425 |
39DAP/reference | 0.98485 | 0.643 |
41DAP/reference | 1.05253 | 0.818 |
42DAP/reference | 0.79091 | 0.049 |
43DAP/reference | 0.86762 | 0.137 |
47DAP/reference | 0.89993 | 0.168 |
52DAP/reference | 0.97352 | 0.65 |
57DAP/reference | 0.85061 | 0.136 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.30709 | 0.945 |
26DAP/20DAP | 1.05055 | 1 |
34DAP/26DAP | 0.87754 | 0.841 |
51DAP/34DAP | 1.32675 | 0.535 |
52DAP/51DAP | 1.27358 | 0.733 |
53DAP/52DAP | 1.25691 | 0.537 |
55DAP/53DAP | 1.08061 | 0.948 |
57DAP/55DAP | 1.12019 | 0.881 |
62DAP/57DAP | 1.0075 | 1 |
68DAP/62DAP | 1.10531 | 0.914 |
68DAP/14DAP | 0.95018 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.59462 | 0.026 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 12.3227 | 0.05 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.01094 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05023 | 1 |
1-1-2/M82 | 0.93723 | 1 |
12-2/M82 | 1.0211 | 1 |
12-4/M82 | 1.34246 | |
1-3/M82 | 0.5831 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.09356 | 0.395 |
3-2/M82 | 0.85876 | |
4-1-1/M82 | 1.39738 | |
4-1/M82 | 1.02414 | |
4-3-2/M82 | 1.08271 | |
4-3/M82 | 0.9119 | |
5-3/M82 | 0.92915 | 1 |
6-2/M82 | 0.79634 | |
6-3/M82 | 1.01093 | 1 |
7-1/M82 | 1.02088 | |
7-2/M82 | 1.00553 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93519 | 1 |
IL2-6/WTpooled | 1.77665 | 0.415 |
IL7-5/WTpooled | 0.95806 | 1 |
IL7-3/WTpooled | 0.85087 | 0.418 |
IL12-4/WTpooled | 1.05915 | 1 |
IL1-4/WTpooled | 0.90029 | 0.699 |
WT/WTpooled | 1.16401 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.43757 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95737 | 1 |
DC3000/delta hrp 6h | 0.98299 | 0.95 |
DC3000/delta hrp 12h | 0.90849 | 1 |
DC3000/delta hrp 24h | 1.39623 | 0.063 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.09344 | 0.042 |
DC3000 delta B/DC3000 delta AB | 2.18981 | 0.031 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.79166 | 1 |
Exp 36h | 1.90295 | 1 |
Exp 60h | 1.96653 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.93701 | 1 |
Var 0h | 0.60551 | 0.933 |
Var 12h I row2-row1 | 0.99097 | 1 |
Var 12h NI row2-row1 | 1.44236 | 1 |
Var 36h I row2-row1 | 1.24946 | 0.601 |
Var 36h NI row2-row1 | 0.43366 | 1 |
Var 60h I row2-row1 | 0.97473 | 1 |
Var 60h NI row2-row1 | 0.31873 | 0.359 |
Time course 0hI-0hNI | 1.07364 | 1 |
Time course 12hI-12hNI | 0.81172 | 0.897 |
Time course 36hI-36hNI | 4.08666 | 0.006 |
Time course 60hI-60hNI | 5.18043 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.939 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 0.84973 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.12604 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.38436 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.73539 | 0.172 |
Manapal/WT (break) | 0.80013 | 0.299 |
Manapal/WT (red) | 1.07969 | 1 |
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